RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 CXCL14O95715 111 aa11.81□□□□□ -0.52
SHMT2-215ENST00000554656 P4HBP07237 508 aaKnown RBP11.81□□□□□ -0.52
SHMT2-215ENST00000554656 SRGAP2BP0DMP2 458 aa11.81□□□□□ -0.52
SHMT2-215ENST00000554656 CTSAP10619 480 aa11.81□□□□□ -0.52
SHMT2-215ENST00000554656 FDPSP14324 419 aaKnown RBP11.81□□□□□ -0.52
SHMT2-215ENST00000554656 GCFC2P16383 781 aaKnown RBP11.81□□□□□ -0.52
SHMT2-215ENST00000554656 EPCAMP16422 314 aa11.81□□□□□ -0.52
SHMT2-215ENST00000554656 HOXA11P31270 313 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-215ENST00000554656 ALDH7A1P49419 539 aaKnown RBP11.81□□□□□ -0.52
SHMT2-215ENST00000554656 VCPP55072 806 aaKnown RBP11.81□□□□□ -0.52
SHMT2-215ENST00000554656 CDC42EP1Q00587 391 aa11.81□□□□□ -0.52
SHMT2-215ENST00000554656 SIGLEC14Q08ET2 396 aa11.81□□□□□ -0.52
SHMT2-215ENST00000554656 LAMTOR4Q0VGL1 99 aa11.81□□□□□ -0.52
SHMT2-215ENST00000554656 NR5A1Q13285 461 aa11.81□□□□□ -0.52
SHMT2-215ENST00000554656 GLB1LQ6UWU2 654 aa11.81□□□□□ -0.52
SHMT2-215ENST00000554656 DDX53Q86TM3 631 aaKnown RBP11.81□□□□□ -0.52
SHMT2-215ENST00000554656 SLC22A17Q8WUG5 538 aa11.81□□□□□ -0.52
SHMT2-215ENST00000554656 PRPF31Q8WWY3 499 aaKnown RBP11.81□□□□□ -0.52
SHMT2-215ENST00000554656 GTF3C6Q969F1 213 aa11.81□□□□□ -0.52
SHMT2-215ENST00000554656 PBXIP1Q96AQ6 731 aa11.81□□□□□ -0.52
SHMT2-215ENST00000554656 TMEM169Q96HH4 297 aa11.81□□□□□ -0.52
SHMT2-215ENST00000554656 DYDC2Q96IM9 177 aa11.81□□□□□ -0.52
SHMT2-215ENST00000554656 CEP170P1Q96L14 293 aa11.81□□□□□ -0.52
SHMT2-215ENST00000554656 LLPHQ9BRT6 129 aaKnown RBP11.81□□□□□ -0.52
SHMT2-215ENST00000554656 GBP3Q9H0R5 595 aa11.81□□□□□ -0.52
SHMT2-215ENST00000554656 XPNPEP1Q9NQW7 623 aa11.81□□□□□ -0.52
SHMT2-215ENST00000554656 PCDHB2Q9Y5E7 798 aa11.81□□□□□ -0.52
SHMT2-215ENST00000554656 C2CD4DB7Z1M9 353 aa11.8□□□□□ -0.52
SHMT2-215ENST00000554656 TBX3O15119 743 aa11.8□□□□□ -0.52
SHMT2-215ENST00000554656 CCNT1O60563 726 aaKnown RBP11.8□□□□□ -0.52
SHMT2-215ENST00000554656 DDHD2O94830 711 aa11.8□□□□□ -0.52
SHMT2-215ENST00000554656 PDGFBP01127 241 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-215ENST00000554656 RAB27AP51159 221 aa11.8□□□□□ -0.52
SHMT2-215ENST00000554656 POLGP54098 1239 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-215ENST00000554656 CYP4A11Q02928 519 aa11.8□□□□□ -0.52
SHMT2-215ENST00000554656 CTTNQ14247 550 aaKnown RBP11.8□□□□□ -0.52
SHMT2-215ENST00000554656 EMC2Q15006 297 aa11.8□□□□□ -0.52
SHMT2-215ENST00000554656 EPHA7Q15375 998 aa11.8□□□□□ -0.52
SHMT2-215ENST00000554656 TPRNQ4KMQ1 711 aa11.8□□□□□ -0.52
SHMT2-215ENST00000554656 RARS2Q5T160 578 aaKnown RBP11.8□□□□□ -0.52
SHMT2-215ENST00000554656 NCAPH2Q6IBW4 605 aa11.8□□□□□ -0.52
SHMT2-215ENST00000554656 CLEC17AQ6ZS10 378 aa11.8□□□□□ -0.52
SHMT2-215ENST00000554656 MRPL10Q7Z7H8 261 aaKnown RBP11.8□□□□□ -0.52
SHMT2-215ENST00000554656 CCDC83Q8IWF9 413 aa11.8□□□□□ -0.52
SHMT2-215ENST00000554656 C4orf19Q8IY42 314 aa11.8□□□□□ -0.52
SHMT2-215ENST00000554656 FBXL6Q8N531 539 aa11.8□□□□□ -0.52
SHMT2-215ENST00000554656 PSPC1Q8WXF1 523 aaKnown RBP11.8□□□□□ -0.52
SHMT2-215ENST00000554656 SLC7A3Q8WY07 619 aa11.8□□□□□ -0.52
SHMT2-215ENST00000554656 JPH2Q9BR39 696 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-215ENST00000554656 INO80BQ9C086 356 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-215ENST00000554656 ADAM7Q9H2U9 754 aa11.8□□□□□ -0.52
SHMT2-215ENST00000554656 SMOC2Q9H3U7 446 aa11.8□□□□□ -0.52
SHMT2-215ENST00000554656 ORC3Q9UBD5 711 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-215ENST00000554656 SMC3Q9UQE7 1217 aa11.8□□□□□ -0.52
SHMT2-215ENST00000554656 IRAK3Q9Y616 596 aa11.8□□□□□ -0.52
SHMT2-215ENST00000554656 DOCK8Q8NF50 2099 aa11.79□□□□□ -0.52
SHMT2-215ENST00000554656 CDKL5O76039 1030 aa11.79□□□□□ -0.52
SHMT2-215ENST00000554656 SRGAP2CP0DJJ0 459 aa11.79□□□□□ -0.52
SHMT2-215ENST00000554656 SKIP12755 728 aa11.79□□□□□ -0.52
SHMT2-215ENST00000554656 PDCP20941 246 aa11.79□□□□□ -0.52
SHMT2-215ENST00000554656 YWHABP31946 246 aaKnown RBP11.79□□□□□ -0.52
SHMT2-215ENST00000554656 CA8P35219 290 aa11.79□□□□□ -0.52
SHMT2-215ENST00000554656 RFC5P40937 340 aa11.79□□□□□ -0.52
SHMT2-215ENST00000554656 HMGN5P82970 282 aaKnown RBP11.79□□□□□ -0.52
SHMT2-215ENST00000554656 TCF15Q12870 199 aa11.79□□□□□ -0.52
SHMT2-215ENST00000554656 PTPN14Q15678 1187 aa11.79□□□□□ -0.52
SHMT2-215ENST00000554656 SRGAP1Q7Z6B7 1085 aa11.79□□□□□ -0.52
SHMT2-215ENST00000554656 FERMT3Q86UX7 667 aa11.79□□□□□ -0.52
SHMT2-215ENST00000554656 NECAB1Q8N987 351 aa11.79□□□□□ -0.52
SHMT2-215ENST00000554656 KREMEN2Q8NCW0 462 aa11.79□□□□□ -0.52
SHMT2-215ENST00000554656 SMG8Q8ND04 991 aaKnown RBP11.79□□□□□ -0.52
SHMT2-215ENST00000554656 RSPH1Q8WYR4 309 aa11.79□□□□□ -0.52
SHMT2-215ENST00000554656 KIF3AQ9Y496 699 aa11.79□□□□□ -0.52
SHMT2-215ENST00000554656 USP34Q70CQ2 3546 aa11.78□□□□□ -0.52
SHMT2-215ENST00000554656 MTCL1Q9Y4B5 1905 aaKnown RBP11.78□□□□□ -0.52
SHMT2-215ENST00000554656 LILRB3O75022 631 aa11.78□□□□□ -0.52
SHMT2-215ENST00000554656 BRD1O95696 1058 aa11.78□□□□□ -0.52
SHMT2-215ENST00000554656 RNASELQ05823 741 aaKnown RBP11.78□□□□□ -0.52
SHMT2-215ENST00000554656 ITIH3Q06033 890 aa11.78□□□□□ -0.52
SHMT2-215ENST00000554656 ST3GAL1Q11201 340 aa11.78□□□□□ -0.52
SHMT2-215ENST00000554656 XKR9Q5GH70 373 aa11.78□□□□□ -0.52
SHMT2-215ENST00000554656 KIAA1841Q6NSI8 718 aa11.78□□□□□ -0.52
SHMT2-215ENST00000554656 RNF149Q8NC42 400 aa11.78□□□□□ -0.52
SHMT2-215ENST00000554656 ASAP3Q8TDY4 903 aa11.78□□□□□ -0.52
SHMT2-215ENST00000554656 EIF2AQ9BY44 585 aaKnown RBP11.78□□□□□ -0.52
SHMT2-215ENST00000554656 RNF39Q9H2S5 420 aa11.78□□□□□ -0.52
SHMT2-215ENST00000554656 RSAD1Q9HA92 442 aa11.78□□□□□ -0.52
SHMT2-215ENST00000554656 FOXD4L1Q9NU39 408 aa11.78□□□□□ -0.52
SHMT2-215ENST00000554656 DZANK1Q9NVP4 752 aa11.78□□□□□ -0.52
SHMT2-215ENST00000554656 MARCH5Q9NX47 278 aa11.78□□□□□ -0.52
SHMT2-215ENST00000554656 PPME1Q9Y570 386 aa11.78□□□□□ -0.52
SHMT2-215ENST00000554656 TCHHQ07283 1943 aa11.78□□□□□ -0.52
SHMT2-215ENST00000554656 DOCK6Q96HP0 2047 aa11.77□□□□□ -0.52
SHMT2-215ENST00000554656 F8W810 466 aa11.77□□□□□ -0.53
SHMT2-215ENST00000554656 INPPL1O15357 1258 aa11.77□□□□□ -0.53
SHMT2-215ENST00000554656 GAS2O43903 313 aaKnown RBP11.77□□□□□ -0.53
SHMT2-215ENST00000554656 TSPAN1O60635 241 aa11.77□□□□□ -0.53
SHMT2-215ENST00000554656 DKC1O60832 514 aaKnown RBP eCLIP11.77□□□□□ -0.53
SHMT2-215ENST00000554656 SLITRK3O94933 977 aa11.77□□□□□ -0.53
SHMT2-215ENST00000554656 EFEMP2O95967 443 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms