RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 TCEAL5Q5H9L2 206 aa12.82□□□□□ -0.36
CCDC88C-208ENST00000554165 CDCA2Q69YH5 1023 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-208ENST00000554165 FAM43BQ6ZT52 329 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-208ENST00000554165 MRPL10Q7Z7H8 261 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-208ENST00000554165 C11orf84Q9BUA3 381 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-208ENST00000554165 FBXO2Q9UK22 296 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-208ENST00000554165 STK24Q9Y6E0 443 aa12.82□□□□□ -0.36
CCDC88C-208ENST00000554165 NT5C1B-RDH14C9J2C7 533 aa12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 ZNF623O75123 536 aa12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 PLA2G4BP0C869 781 aa12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 PLCG1P19174 1290 aa12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 GTF2F1P35269 517 aaKnown RBP eCLIP12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 SLC12A3P55017 1021 aa12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 DHX8Q14562 1220 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 ARSHQ5FYA8 562 aa12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 ABI1Q8IZP0 508 aa12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 DEPTORQ8TB45 409 aa12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 CHAMP1Q96JM3 812 aa12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 APOL6Q9BWW8 343 aa12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 PLVAPQ9BX97 442 aa12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 NFKBIZQ9BYH8 718 aa12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 CCDC113Q9H0I3 377 aa12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 FZD8Q9H461 694 aa12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 NXF3Q9H4D5 531 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 BLOC1S4Q9NUP1 217 aa12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 LMCD1Q9NZU5 365 aa12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 RWDD3Q9Y3V2 267 aa12.81□□□□□ -0.36
CCDC88C-208ENST00000554165 HOXA2O43364 376 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 FGF18O76093 207 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 NPTXRO95502 500 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 BMP15O95972 392 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 AKAP5P24588 427 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 LONP1P36776 959 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 UBA7P41226 1012 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 NAMPTP43490 491 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 NPTX2P47972 431 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 PEX3P56589 373 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 MCM6Q14566 821 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 PTPROQ16827 1216 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 NOMO2Q5JPE7 1267 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 NT5DC1Q5TFE4 455 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 EEF1DP3Q658K8 133 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 NOTUMQ6P988 496 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 KCNT2Q6UVM3 1135 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 TAS1R3Q7RTX0 852 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 TMEM173Q86WV6 379 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 ZNF280BQ86YH2 543 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 ZBTB8OSQ8IWT0 167 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 THNSL1Q8IYQ7 743 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 LRRC43Q8N309 656 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 SYT2Q8N9I0 419 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 BCL7CQ8WUZ0 217 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 POF1BQ8WVV4 589 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 P2RX5Q93086 422 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 CDK5RAP3Q96JB5 506 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 AK8Q96MA6 479 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 GBP3Q9H0R5 595 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 CXCL16Q9H2A7 254 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 TBC1D13Q9NVG8 400 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 MIOSQ9NXC5 875 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 DNAJB4Q9UDY4 337 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 IPPQ9Y573 584 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 PLXNA4Q9HCM2 1894 aa12.8□□□□□ -0.36
CCDC88C-208ENST00000554165 A0A087X0B3 334 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 A0A1B0GUA9 196 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 CCDC169A6NNP5 214 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 DDHD2O94830 711 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 PRKCBP05771 671 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 ZSCAN22P10073 491 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 SKIP12755 728 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 LAG3P18627 525 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 NCLP19338 710 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 AXLP30530 894 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 RAB27AP51159 221 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 KCNQ1P51787 676 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 BCAR1P56945 870 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 ERVFC1P60507 584 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 HYAL1Q12794 435 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 SLC39A14Q15043 492 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 GLB1LQ6UWU2 654 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 ADGRD2Q7Z7M1 963 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 SYMPKQ92797 1274 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 KIFAP3Q92845 792 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 IFT74Q96LB3 600 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 ZFP42Q96MM3 310 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 GAD1Q99259 594 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 PANK2Q9BZ23 570 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 ZSCAN16Q9H4T2 348 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 PDZD7Q9H5P4 517 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 NRDE2Q9H7Z3 1164 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 RSAD1Q9HA92 442 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 PRMT7Q9NVM4 692 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 KLK14Q9P0G3 267 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 THEGQ9P2T0 379 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 DAXXQ9UER7 740 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 PCDHB12Q9Y5F1 795 aa12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 SRPRBQ9Y5M8 271 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-208ENST00000554165 SLC16A4O15374 487 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 LINC01565O15544 149 aa12.78□□□□□ -0.36
CCDC88C-208ENST00000554165 ZC3H11AO75152 810 aaKnown RBP eCLIP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms