RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 NOMO2Q5JPE7 1267 aa16.95■□□□□ 0.3
SHMT2-204ENST00000553324 PDE12Q6L8Q7 609 aaKnown RBP16.95■□□□□ 0.3
SHMT2-204ENST00000553324 RINT1Q6NUQ1 792 aa16.95■□□□□ 0.3
SHMT2-204ENST00000553324 LRRC55Q6ZSA7 311 aa16.95■□□□□ 0.3
SHMT2-204ENST00000553324 C1orf186Q6ZWK4 172 aa16.95■□□□□ 0.3
SHMT2-204ENST00000553324 THNSL1Q8IYQ7 743 aa16.95■□□□□ 0.3
SHMT2-204ENST00000553324 COLGALT1Q8NBJ5 622 aa16.95■□□□□ 0.3
SHMT2-204ENST00000553324 URGCPQ8TCY9 931 aa16.95■□□□□ 0.3
SHMT2-204ENST00000553324 ALG13Q9NP73 1137 aaKnown RBP16.95■□□□□ 0.3
SHMT2-204ENST00000553324 RBM19Q9Y4C8 960 aaKnown RBP16.95■□□□□ 0.3
SHMT2-204ENST00000553324 SRPRBQ9Y5M8 271 aaKnown RBP16.95■□□□□ 0.3
SHMT2-204ENST00000553324 CLIC4Q9Y696 253 aa16.95■□□□□ 0.3
SHMT2-204ENST00000553324 MORC2Q9Y6X9 1032 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-204ENST00000553324 ACKR2O00590 384 aa16.94■□□□□ 0.3
SHMT2-204ENST00000553324 OFD1O75665 1012 aa16.94■□□□□ 0.3
SHMT2-204ENST00000553324 FGF18O76093 207 aa16.94■□□□□ 0.3
SHMT2-204ENST00000553324 ITGB1P05556 798 aa16.94■□□□□ 0.3
SHMT2-204ENST00000553324 PLA2G4BP0C869 781 aa16.94■□□□□ 0.3
SHMT2-204ENST00000553324 ITGA4P13612 1032 aa16.94■□□□□ 0.3
SHMT2-204ENST00000553324 ARF4P18085 180 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-204ENST00000553324 GUCY2CP25092 1073 aa16.94■□□□□ 0.3
SHMT2-204ENST00000553324 PLCB3Q01970 1234 aa16.94■□□□□ 0.3
SHMT2-204ENST00000553324 DMP1Q13316 513 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-204ENST00000553324 PTPAQ15257 358 aa16.94■□□□□ 0.3
SHMT2-204ENST00000553324 UBXN11Q5T124 520 aa16.94■□□□□ 0.3
SHMT2-204ENST00000553324 SLC27A1Q6PCB7 646 aa16.94■□□□□ 0.3
SHMT2-204ENST00000553324 KCNT2Q6UVM3 1135 aa16.94■□□□□ 0.3
SHMT2-204ENST00000553324 RASSF8Q8NHQ8 419 aa16.94■□□□□ 0.3
SHMT2-204ENST00000553324 POF1BQ8WVV4 589 aa16.94■□□□□ 0.3
SHMT2-204ENST00000553324 ZNF558Q96NG5 402 aa16.94■□□□□ 0.3
SHMT2-204ENST00000553324 PNMA5Q96PV4 448 aa16.94■□□□□ 0.3
SHMT2-204ENST00000553324 RSAD1Q9HA92 442 aa16.94■□□□□ 0.3
SHMT2-204ENST00000553324 LZTS1Q9Y250 596 aa16.94■□□□□ 0.3
SHMT2-204ENST00000553324 PRRC2BQ5JSZ5 2229 aaKnown RBP16.93■□□□□ 0.3
SHMT2-204ENST00000553324 K7ERI5 159 aa16.93■□□□□ 0.3
SHMT2-204ENST00000553324 SSBP05455 408 aaKnown RBP eCLIP16.93■□□□□ 0.3
SHMT2-204ENST00000553324 SMTNP53814 917 aa16.93■□□□□ 0.3
SHMT2-204ENST00000553324 SLC12A3P55017 1021 aa16.93■□□□□ 0.3
SHMT2-204ENST00000553324 RNASELQ05823 741 aaKnown RBP16.93■□□□□ 0.3
SHMT2-204ENST00000553324 PRPF4BQ13523 1007 aaKnown RBP16.93■□□□□ 0.3
SHMT2-204ENST00000553324 BMS1Q14692 1282 aaKnown RBP16.93■□□□□ 0.3
SHMT2-204ENST00000553324 TMEM119Q4V9L6 283 aa16.93■□□□□ 0.3
SHMT2-204ENST00000553324 TJAP1Q5JTD0 557 aa16.93■□□□□ 0.3
SHMT2-204ENST00000553324 APBB1IPQ7Z5R6 666 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-204ENST00000553324 LPPQ93052 612 aa16.93■□□□□ 0.3
SHMT2-204ENST00000553324 CPB2Q96IY4 423 aa16.93■□□□□ 0.3
SHMT2-204ENST00000553324 ZNF396Q96N95 335 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-204ENST00000553324 ASB2Q96Q27 587 aa16.93■□□□□ 0.3
SHMT2-204ENST00000553324 CCSER1Q9C0I3 900 aa16.93■□□□□ 0.3
SHMT2-204ENST00000553324 PRDM6Q9NQX0 595 aa16.93■□□□□ 0.3
SHMT2-204ENST00000553324 SPG21Q9NZD8 308 aa16.93■□□□□ 0.3
SHMT2-204ENST00000553324 CCDC39Q9UFE4 941 aa16.93■□□□□ 0.3
SHMT2-204ENST00000553324 GIT1Q9Y2X7 761 aa16.93■□□□□ 0.3
SHMT2-204ENST00000553324 IPPQ9Y573 584 aa16.93■□□□□ 0.3
SHMT2-204ENST00000553324 XIRP2A4UGR9 3374 aa16.92■□□□□ 0.3
SHMT2-204ENST00000553324 CCDC169A6NNP5 214 aa16.92■□□□□ 0.3
SHMT2-204ENST00000553324 N4BP3O15049 544 aa16.92■□□□□ 0.3
SHMT2-204ENST00000553324 HIP1RO75146 1068 aa16.92■□□□□ 0.3
SHMT2-204ENST00000553324 PRKCBP05771 671 aa16.92■□□□□ 0.3
SHMT2-204ENST00000553324 TXLNAP40222 546 aa16.92■□□□□ 0.3
SHMT2-204ENST00000553324 PEX3P56589 373 aa16.92■□□□□ 0.3
SHMT2-204ENST00000553324 SLC39A14Q15043 492 aa16.92■□□□□ 0.3
SHMT2-204ENST00000553324 TMEM132AQ24JP5 1023 aa16.92■□□□□ 0.3
SHMT2-204ENST00000553324 LONRF3Q496Y0 759 aa16.92■□□□□ 0.3
SHMT2-204ENST00000553324 AGMOQ6ZNB7 445 aa16.92■□□□□ 0.3
SHMT2-204ENST00000553324 KCNK18Q7Z418 384 aa16.92■□□□□ 0.3
SHMT2-204ENST00000553324 MICAL1Q8TDZ2 1067 aa16.92■□□□□ 0.3
SHMT2-204ENST00000553324 BSNDQ8WZ55 320 aa16.92■□□□□ 0.3
SHMT2-204ENST00000553324 PLIN2Q99541 437 aa16.92■□□□□ 0.3
SHMT2-204ENST00000553324 ADPGKQ9BRR6 497 aa16.92■□□□□ 0.3
SHMT2-204ENST00000553324 NTPCRQ9BSD7 190 aaKnown RBP16.92■□□□□ 0.3
SHMT2-204ENST00000553324 TMEM134Q9H6X4 195 aa16.92■□□□□ 0.3
SHMT2-204ENST00000553324 STK39Q9UEW8 545 aa16.92■□□□□ 0.3
SHMT2-204ENST00000553324 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.91■□□□□ 0.3
SHMT2-204ENST00000553324 FSD2A1L4K1 749 aa16.91■□□□□ 0.3
SHMT2-204ENST00000553324 ALDH2P05091 517 aa16.91■□□□□ 0.3
SHMT2-204ENST00000553324 MARCKSP29966 332 aaPredicted RBP16.91■□□□□ 0.3
SHMT2-204ENST00000553324 DDIT3P35638 169 aa16.91■□□□□ 0.3
SHMT2-204ENST00000553324 NPTX2P47972 431 aa16.91■□□□□ 0.3
SHMT2-204ENST00000553324 BCAR1P56945 870 aa16.91■□□□□ 0.3
SHMT2-204ENST00000553324 CEBPZQ03701 1054 aaKnown RBP16.91■□□□□ 0.3
SHMT2-204ENST00000553324 TCEAL5Q5H9L2 206 aa16.91■□□□□ 0.3
SHMT2-204ENST00000553324 FAM173BQ6P4H8 233 aa16.91■□□□□ 0.3
SHMT2-204ENST00000553324 SMG8Q8ND04 991 aaKnown RBP16.91■□□□□ 0.3
SHMT2-204ENST00000553324 MRPS27Q92552 414 aaKnown RBP16.91■□□□□ 0.3
SHMT2-204ENST00000553324 FAM193BQ96PV7 902 aaPredicted RBP16.91■□□□□ 0.3
SHMT2-204ENST00000553324 USP28Q96RU2 1077 aa16.91■□□□□ 0.3
SHMT2-204ENST00000553324 RUSC1Q9BVN2 902 aa16.91■□□□□ 0.3
SHMT2-204ENST00000553324 EIF2AQ9BY44 585 aaKnown RBP16.91■□□□□ 0.3
SHMT2-204ENST00000553324 CCDC113Q9H0I3 377 aa16.91■□□□□ 0.3
SHMT2-204ENST00000553324 NGRNQ9NPE2 291 aaKnown RBP16.91■□□□□ 0.3
SHMT2-204ENST00000553324 KMT5AQ9NQR1 393 aa16.91■□□□□ 0.3
SHMT2-204ENST00000553324 TLR9Q9NR96 1032 aa16.91■□□□□ 0.3
SHMT2-204ENST00000553324 TBC1D13Q9NVG8 400 aa16.91■□□□□ 0.3
SHMT2-204ENST00000553324 LARSQ9P2J5 1176 aaKnown RBP16.91■□□□□ 0.3
SHMT2-204ENST00000553324 INPP5FQ9Y2H2 1132 aa16.91■□□□□ 0.3
SHMT2-204ENST00000553324 H0YCG3 227 aa16.9■□□□□ 0.3
SHMT2-204ENST00000553324 INPPL1O15357 1258 aa16.9■□□□□ 0.3
SHMT2-204ENST00000553324 B4GALT5O43286 388 aa16.9■□□□□ 0.3
SHMT2-204ENST00000553324 NR1I2O75469 434 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms