RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 MCAMP43121 646 aa6.34□□□□□ -1.39
SCFD1-209ENST00000553280 AK2P54819 239 aa6.34□□□□□ -1.39
SCFD1-209ENST00000553280 FAM193AP78312 1265 aa6.34□□□□□ -1.39
SCFD1-209ENST00000553280 SEMA5AQ13591 1074 aa6.34□□□□□ -1.39
SCFD1-209ENST00000553280 TCERG1LQ5VWI1 586 aa6.34□□□□□ -1.39
SCFD1-209ENST00000553280 VASNQ6EMK4 673 aa6.34□□□□□ -1.39
SCFD1-209ENST00000553280 LIPIQ6XZB0 460 aa6.34□□□□□ -1.39
SCFD1-209ENST00000553280 CCDC149Q6ZUS6 474 aa6.34□□□□□ -1.39
SCFD1-209ENST00000553280 GAREM2Q75VX8 874 aa6.34□□□□□ -1.39
SCFD1-209ENST00000553280 BMP8AQ7Z5Y6 402 aa6.34□□□□□ -1.39
SCFD1-209ENST00000553280 MARCH10Q8NA82 808 aaPredicted RBP6.34□□□□□ -1.39
SCFD1-209ENST00000553280 CPA5Q8WXQ8 436 aa6.34□□□□□ -1.39
SCFD1-209ENST00000553280 ALG3Q92685 438 aa6.34□□□□□ -1.39
SCFD1-209ENST00000553280 DDX11Q96FC9 970 aa6.34□□□□□ -1.39
SCFD1-209ENST00000553280 NOL10Q9BSC4 688 aaKnown RBP6.34□□□□□ -1.39
SCFD1-209ENST00000553280 RBPJLQ9UBG7 517 aa6.34□□□□□ -1.39
SCFD1-209ENST00000553280 INTUQ9ULD6 942 aa6.34□□□□□ -1.39
SCFD1-209ENST00000553280 DAAM1Q9Y4D1 1078 aa6.34□□□□□ -1.39
SCFD1-209ENST00000553280 NRP2O60462 931 aa6.33□□□□□ -1.4
SCFD1-209ENST00000553280 CUTAO60888 179 aa6.33□□□□□ -1.4
SCFD1-209ENST00000553280 SERPINB3P29508 390 aa6.33□□□□□ -1.4
SCFD1-209ENST00000553280 AGFG1P52594 562 aaKnown RBP6.33□□□□□ -1.4
SCFD1-209ENST00000553280 STILQ15468 1287 aa6.33□□□□□ -1.4
SCFD1-209ENST00000553280 KIAA0753Q2KHM9 967 aa6.33□□□□□ -1.4
SCFD1-209ENST00000553280 VMACQ2NL98 169 aa6.33□□□□□ -1.4
SCFD1-209ENST00000553280 DARS2Q6PI48 645 aaKnown RBP6.33□□□□□ -1.4
SCFD1-209ENST00000553280 KLHDC10Q6PID8 442 aa6.33□□□□□ -1.4
SCFD1-209ENST00000553280 TTLL10Q6ZVT0 673 aa6.33□□□□□ -1.4
SCFD1-209ENST00000553280 ZC3H18Q86VM9 953 aaKnown RBP6.33□□□□□ -1.4
SCFD1-209ENST00000553280 LDHDQ86WU2 507 aa6.33□□□□□ -1.4
SCFD1-209ENST00000553280 DTX3Q8N9I9 347 aa6.33□□□□□ -1.4
SCFD1-209ENST00000553280 WDR48Q8TAF3 677 aa6.33□□□□□ -1.4
SCFD1-209ENST00000553280 HDAC10Q969S8 669 aa6.33□□□□□ -1.4
SCFD1-209ENST00000553280 HIST1H2AHQ96KK5 128 aa6.33□□□□□ -1.4
SCFD1-209ENST00000553280 TNIP3Q96KP6 325 aa6.33□□□□□ -1.4
SCFD1-209ENST00000553280 HIST1H2AJQ99878 128 aa6.33□□□□□ -1.4
SCFD1-209ENST00000553280 LRFN3Q9BTN0 628 aa6.33□□□□□ -1.4
SCFD1-209ENST00000553280 EPB41L4AQ9HCS5 686 aaPredicted RBP6.33□□□□□ -1.4
SCFD1-209ENST00000553280 NLRC4Q9NPP4 1024 aa6.33□□□□□ -1.4
SCFD1-209ENST00000553280 PUF60Q9UHX1 559 aaKnown RBP6.33□□□□□ -1.4
SCFD1-209ENST00000553280 XPAP23025 273 aaPredicted RBP6.32□□□□□ -1.4
SCFD1-209ENST00000553280 HTR1BP28222 390 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 IL12RB1P42701 662 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 CACNB3P54284 484 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 ZNF200P98182 395 aaPredicted RBP6.32□□□□□ -1.4
SCFD1-209ENST00000553280 ZRSR2Q15696 482 aaKnown RBP6.32□□□□□ -1.4
SCFD1-209ENST00000553280 SKIDA1Q1XH10 827 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 C3orf36Q3SXR2 165 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 ANO6Q4KMQ2 910 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 C4orf46Q504U0 113 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 KANK2Q63ZY3 851 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 NPNTQ6UXI9 565 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 CD300LDQ6UXZ3 194 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 CXXC5Q7LFL8 322 aaKnown RBP6.32□□□□□ -1.4
SCFD1-209ENST00000553280 IGDCC3Q8IVU1 814 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 FAM186BQ8IYM0 893 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 TMEFF1Q8IYR6 380 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 FAM26EQ8N5C1 309 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 GLB1L3Q8NCI6 653 aaPredicted RBP6.32□□□□□ -1.4
SCFD1-209ENST00000553280 PARD3BQ8TEW8 1205 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 DPF2Q92785 391 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 PAWRQ96IZ0 340 aaKnown RBP6.32□□□□□ -1.4
SCFD1-209ENST00000553280 CGRRF1Q99675 332 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 MYD88Q99836 296 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 ADI1Q9BV57 179 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 B3GNT5Q9BYG0 378 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 HAPLN2Q9GZV7 340 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 ZCCHC4Q9H5U6 513 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 DLL4Q9NR61 685 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 SYNPO2Q9UMS6 1093 aa6.32□□□□□ -1.4
SCFD1-209ENST00000553280 CFAP20Q9Y6A4 193 aaKnown RBP6.32□□□□□ -1.4
SCFD1-209ENST00000553280 KRTAP9-7A8MTY7 169 aa6.31□□□□□ -1.4
SCFD1-209ENST00000553280 GOLIM4O00461 696 aa6.31□□□□□ -1.4
SCFD1-209ENST00000553280 SEC24DO94855 1032 aaPredicted RBP6.31□□□□□ -1.4
SCFD1-209ENST00000553280 ALDH5A1P51649 535 aaPredicted RBP6.31□□□□□ -1.4
SCFD1-209ENST00000553280 AFF3P51826 1226 aaKnown RBP6.31□□□□□ -1.4
SCFD1-209ENST00000553280 NRG3P56975 720 aa6.31□□□□□ -1.4
SCFD1-209ENST00000553280 DSC2Q02487 901 aa6.31□□□□□ -1.4
SCFD1-209ENST00000553280 PPP3CAQ08209 521 aa6.31□□□□□ -1.4
SCFD1-209ENST00000553280 CACNB2Q08289 660 aaPredicted RBP6.31□□□□□ -1.4
SCFD1-209ENST00000553280 RNF220Q5VTB9 566 aa6.31□□□□□ -1.4
SCFD1-209ENST00000553280 CNKSR3Q6P9H4 555 aa6.31□□□□□ -1.4
SCFD1-209ENST00000553280 TMC5Q6UXY8 1006 aa6.31□□□□□ -1.4
SCFD1-209ENST00000553280 PPP1R14CQ8TAE6 165 aa6.31□□□□□ -1.4
SCFD1-209ENST00000553280 ZNF526Q8TF50 670 aaPredicted RBP6.31□□□□□ -1.4
SCFD1-209ENST00000553280 RIN2Q8WYP3 895 aaPredicted RBP6.31□□□□□ -1.4
SCFD1-209ENST00000553280 TMEM209Q96SK2 561 aa6.31□□□□□ -1.4
SCFD1-209ENST00000553280 FDXACB1Q9BRP7 624 aaPredicted RBP6.31□□□□□ -1.4
SCFD1-209ENST00000553280 BHMT2Q9H2M3 363 aa6.31□□□□□ -1.4
SCFD1-209ENST00000553280 KMT5AQ9NQR1 393 aa6.31□□□□□ -1.4
SCFD1-209ENST00000553280 RBM12Q9NTZ6 932 aaKnown RBP6.31□□□□□ -1.4
SCFD1-209ENST00000553280 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.31□□□□□ -1.4
SCFD1-209ENST00000553280 ARHGAP20Q9P2F6 1191 aa6.31□□□□□ -1.4
SCFD1-209ENST00000553280 PLA2G2DQ9UNK4 145 aa6.31□□□□□ -1.4
SCFD1-209ENST00000553280 PCDHA5Q9Y5H7 936 aa6.31□□□□□ -1.4
SCFD1-209ENST00000553280 A0A0A6YYK5 440 aaPredicted RBP6.3□□□□□ -1.4
SCFD1-209ENST00000553280 CAPN8A6NHC0 703 aa6.3□□□□□ -1.4
SCFD1-209ENST00000553280 PQBP1O60828 265 aaKnown RBP6.3□□□□□ -1.4
SCFD1-209ENST00000553280 IL18BPO95998 194 aa6.3□□□□□ -1.4
SCFD1-209ENST00000553280 RPLP2P05387 115 aaKnown RBP6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms