RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 NDRG2Q9UN36 371 aaKnown RBP5.46□□□□□ -1.54
LIMS1-214ENST00000542845 INPP5FQ9Y2H2 1132 aa5.46□□□□□ -1.54
LIMS1-214ENST00000542845 PKD1L2Q7Z442 2459 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 NCAM2O15394 837 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 KCNK5O95279 499 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 TOP3BO95985 862 aaKnown RBP5.45□□□□□ -1.54
LIMS1-214ENST00000542845 CNPP09543 421 aaKnown RBP5.45□□□□□ -1.54
LIMS1-214ENST00000542845 FGRP09769 529 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 FGFR4P22455 802 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 STAT5BP51692 787 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 NRLP54845 237 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 SHC2P98077 582 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 MTAPQ13126 283 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 CSRP2Q16527 193 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 HEATR6Q6AI08 1181 aaKnown RBP5.45□□□□□ -1.54
LIMS1-214ENST00000542845 B4GALNT3Q6L9W6 998 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 PSAPL1Q6NUJ1 521 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 USP17L6PQ6QN14 398 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 C19orf48Q6RUI8 117 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 TPRG1Q6ZUI0 275 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 CEP68Q76N32 757 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 DDX53Q86TM3 631 aaKnown RBP5.45□□□□□ -1.54
LIMS1-214ENST00000542845 RETREG3Q86VR2 466 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 IQCA1Q86XH1 822 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 DGKHQ86XP1 1220 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 ECHDC2Q86YB7 292 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 KIAA0319LQ8IZA0 1049 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 CELF5Q8N6W0 485 aaKnown RBP5.45□□□□□ -1.54
LIMS1-214ENST00000542845 BCL7CQ8WUZ0 217 aaPredicted RBP5.45□□□□□ -1.54
LIMS1-214ENST00000542845 FGF14Q92915 247 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 CUL5Q93034 780 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 IGSF21Q96ID5 467 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 UCN2Q96RP3 112 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 PCYT2Q99447 389 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 KXD1Q9BQD3 176 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 SENP7Q9BQF6 1050 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 ALG2Q9H553 416 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 LTB4R2Q9NPC1 389 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 SLC2A4RGQ9NR83 387 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 MRPL17Q9NRX2 175 aaKnown RBP5.45□□□□□ -1.54
LIMS1-214ENST00000542845 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.45□□□□□ -1.54
LIMS1-214ENST00000542845 DNAJB4Q9UDY4 337 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 KDM3AQ9Y4C1 1321 aa5.45□□□□□ -1.54
LIMS1-214ENST00000542845 FAM208BQ5VWN6 2430 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 EIF4E1BA6NMX2 242 aaKnown RBP5.44□□□□□ -1.54
LIMS1-214ENST00000542845 CHURC1-FNTBB4DL54 471 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 DDX39AO00148 427 aaKnown RBP5.44□□□□□ -1.54
LIMS1-214ENST00000542845 ZNF213O14771 459 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 BACH1O14867 736 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 CSDE1O75534 798 aaKnown RBP5.44□□□□□ -1.54
LIMS1-214ENST00000542845 GALTP07902 379 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 KCNA2P16389 499 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 TARSP26639 723 aaKnown RBP5.44□□□□□ -1.54
LIMS1-214ENST00000542845 MAGEA9P43362 315 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 FNTBP49356 437 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 CRYBB1P53674 252 aaPredicted RBP5.44□□□□□ -1.54
LIMS1-214ENST00000542845 POLGP54098 1239 aaPredicted RBP5.44□□□□□ -1.54
LIMS1-214ENST00000542845 NLRP11P59045 1033 aaKnown RBP5.44□□□□□ -1.54
LIMS1-214ENST00000542845 GHRHRQ02643 423 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 PRKCQQ04759 706 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 MTMR1Q13613 665 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 HTR4Q13639 388 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 DSC3Q14574 896 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 PPP2R5DQ14738 602 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 CCDC178Q5BJE1 867 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 PCNX4Q63HM2 1172 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 ELMSAN1Q6PJG2 1045 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 TBC1D10CQ8IV04 446 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 CKAP2LQ8IYA6 745 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 SAMD3Q8N6K7 520 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 ZCCHC14Q8WYQ9 949 aaKnown RBP5.44□□□□□ -1.54
LIMS1-214ENST00000542845 LPPQ93052 612 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 SCLT1Q96NL6 688 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 ZSCAN10Q96SZ4 725 aaPredicted RBP5.44□□□□□ -1.54
LIMS1-214ENST00000542845 MRPL9Q9BYD2 267 aaKnown RBP5.44□□□□□ -1.54
LIMS1-214ENST00000542845 ARRDC1-AS1Q9H2J1 176 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 NRDE2Q9H7Z3 1164 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 SLC9A2Q9UBY0 812 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 BAZ2BQ9UIF8 2168 aaKnown RBP5.44□□□□□ -1.54
LIMS1-214ENST00000542845 POLIQ9UNA4 740 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 AKT3Q9Y243 479 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 MAFBQ9Y5Q3 323 aaPredicted RBP5.44□□□□□ -1.54
LIMS1-214ENST00000542845 IRAK3Q9Y616 596 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 NEDD4P46934 1319 aa5.44□□□□□ -1.54
LIMS1-214ENST00000542845 DOCK8Q8NF50 2099 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 MTCL1Q9Y4B5 1905 aaKnown RBP5.43□□□□□ -1.54
LIMS1-214ENST00000542845 B4E1Z4 1266 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 ANHXE9PGG2 379 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 GIPC1O14908 333 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 ATP9BO43861 1147 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 GAS2O43903 313 aaKnown RBP5.43□□□□□ -1.54
LIMS1-214ENST00000542845 LRP3O75074 770 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 GLUD1P00367 558 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 ALDH2P05091 517 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 FSHRP23945 695 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 CTHP32929 405 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 SLC11A1P49279 550 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 NOVA1P51513 510 aaKnown RBP5.43□□□□□ -1.54
LIMS1-214ENST00000542845 ACTR2P61160 394 aa5.43□□□□□ -1.54
LIMS1-214ENST00000542845 NTHL1P78549 312 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms