RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 STRN3Q13033 797 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 KLHL40Q2TBA0 621 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 SKOR2Q2VWA4 1001 aaPredicted RBP18.84■□□□□ 0.61
LIG1-204ENST00000542460 CHRDL2Q6WN34 429 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 PPP4R3CPQ6ZMV5 832 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 VWCEQ96DN2 955 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 STRA6Q9BX79 667 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 KIAA1468Q9P260 1216 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 TBX20Q9UMR3 447 aa18.84■□□□□ 0.61
LIG1-204ENST00000542460 PPP1R37O75864 691 aa18.83■□□□□ 0.6
LIG1-204ENST00000542460 AMHR2Q16671 573 aa18.83■□□□□ 0.6
LIG1-204ENST00000542460 ZC2HC1CQ53FD0 456 aaPredicted RBP18.83■□□□□ 0.6
LIG1-204ENST00000542460 CNKSR3Q6P9H4 555 aa18.83■□□□□ 0.6
LIG1-204ENST00000542460 TAS1R3Q7RTX0 852 aa18.83■□□□□ 0.6
LIG1-204ENST00000542460 HVCN1Q96D96 273 aa18.83■□□□□ 0.6
LIG1-204ENST00000542460 FTHL17Q9BXU8 183 aa18.83■□□□□ 0.6
LIG1-204ENST00000542460 SLC39A2Q9NP94 309 aa18.83■□□□□ 0.6
LIG1-204ENST00000542460 CHST12Q9NRB3 414 aa18.83■□□□□ 0.6
LIG1-204ENST00000542460 TSPAN1O60635 241 aa18.82■□□□□ 0.6
LIG1-204ENST00000542460 AXLP30530 894 aa18.82■□□□□ 0.6
LIG1-204ENST00000542460 CASP5P51878 434 aa18.82■□□□□ 0.6
LIG1-204ENST00000542460 STK4Q13043 487 aa18.82■□□□□ 0.6
LIG1-204ENST00000542460 PRPF4BQ13523 1007 aaKnown RBP18.82■□□□□ 0.6
LIG1-204ENST00000542460 FGFBP2Q9BYJ0 223 aa18.82■□□□□ 0.6
LIG1-204ENST00000542460 GTPBP4Q9BZE4 634 aaKnown RBP18.82■□□□□ 0.6
LIG1-204ENST00000542460 AGPAT5Q9NUQ2 364 aa18.82■□□□□ 0.6
LIG1-204ENST00000542460 TANC1Q9C0D5 1861 aa18.82■□□□□ 0.6
LIG1-204ENST00000542460 EIF3DO15371 548 aaKnown RBP eCLIP18.81■□□□□ 0.6
LIG1-204ENST00000542460 MYBP10242 640 aa18.81■□□□□ 0.6
LIG1-204ENST00000542460 ACRP10323 421 aa18.81■□□□□ 0.6
LIG1-204ENST00000542460 ZSCAN20P17040 1043 aaPredicted RBP18.81■□□□□ 0.6
LIG1-204ENST00000542460 HOXA11P31270 313 aaPredicted RBP18.81■□□□□ 0.6
LIG1-204ENST00000542460 MAGEA10P43363 369 aaPredicted RBP18.81■□□□□ 0.6
LIG1-204ENST00000542460 IKBKEQ14164 716 aa18.81■□□□□ 0.6
LIG1-204ENST00000542460 CCDC183Q5T5S1 534 aa18.81■□□□□ 0.6
LIG1-204ENST00000542460 C16orf59Q7L2K0 433 aa18.81■□□□□ 0.6
LIG1-204ENST00000542460 EPM2AIP1Q7L775 607 aaPredicted RBP18.81■□□□□ 0.6
LIG1-204ENST00000542460 MAP4K3Q8IVH8 894 aa18.81■□□□□ 0.6
LIG1-204ENST00000542460 GLIS3Q8NEA6 775 aa18.81■□□□□ 0.6
LIG1-204ENST00000542460 SYAP1Q96A49 352 aaPredicted RBP18.81■□□□□ 0.6
LIG1-204ENST00000542460 MRPL4Q9BYD3 311 aaKnown RBP18.81■□□□□ 0.6
LIG1-204ENST00000542460 TMX1Q9H3N1 280 aa18.81■□□□□ 0.6
LIG1-204ENST00000542460 PIN4Q9Y237 131 aaKnown RBP18.81■□□□□ 0.6
LIG1-204ENST00000542460 CNTNAP2Q9UHC6 1331 aa18.81■□□□□ 0.6
LIG1-204ENST00000542460 B4GALT5O43286 388 aa18.8■□□□□ 0.6
LIG1-204ENST00000542460 FGBP02675 491 aa18.8■□□□□ 0.6
LIG1-204ENST00000542460 ACTN1P12814 892 aa18.8■□□□□ 0.6
LIG1-204ENST00000542460 ARF4P18085 180 aaPredicted RBP18.8■□□□□ 0.6
LIG1-204ENST00000542460 L1TD1Q5T7N2 865 aaKnown RBP18.8■□□□□ 0.6
LIG1-204ENST00000542460 ZNF658Q5TYW1 1059 aaPredicted RBP18.8■□□□□ 0.6
LIG1-204ENST00000542460 PSRC1Q6PGN9 363 aaPredicted RBP18.8■□□□□ 0.6
LIG1-204ENST00000542460 KIAA0895Q8NCT3 520 aa18.8■□□□□ 0.6
LIG1-204ENST00000542460 ZNF507Q8TCN5 953 aa18.8■□□□□ 0.6
LIG1-204ENST00000542460 ACCSQ96QU6 501 aa18.8■□□□□ 0.6
LIG1-204ENST00000542460 MAN1B1Q9UKM7 699 aa18.8■□□□□ 0.6
LIG1-204ENST00000542460 EXOC7Q9UPT5 735 aa18.8■□□□□ 0.6
LIG1-204ENST00000542460 RANBP2P49792 3224 aaKnown RBP18.8■□□□□ 0.6
LIG1-204ENST00000542460 SIP14410 1827 aa18.8■□□□□ 0.6
LIG1-204ENST00000542460 A0A1B0GUA9 196 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 RBAK-RBAKDNI3L0D1 243 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 PRPF6O94906 941 aaKnown RBP18.79■□□□□ 0.6
LIG1-204ENST00000542460 EDN1P05305 212 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 EPHB4P54760 987 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 TMEM132AQ24JP5 1023 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 CAVIN1Q6NZI2 390 aaKnown RBP18.79■□□□□ 0.6
LIG1-204ENST00000542460 NOTUMQ6P988 496 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 ZNF365Q70YC5 407 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 CPB2Q96IY4 423 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 ACO2Q99798 780 aaKnown RBP18.79■□□□□ 0.6
LIG1-204ENST00000542460 TMEM206Q9H813 350 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 ABHD14A-ACY1A0A1B0GW23 586 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 TTLL13PA6NNM8 815 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 EFCAB14O75071 495 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 BAIAP3O94812 1187 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 KIF20AO95235 890 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 KCNA1Q09470 495 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 DSC3Q14574 896 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 TCTN1Q2MV58 587 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 TMEM240Q5SV17 173 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 ATF7IP2Q5U623 682 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 ZPBP2Q6X784 338 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 RBM43Q6ZSC3 357 aaKnown RBP18.79■□□□□ 0.6
LIG1-204ENST00000542460 TRIML1Q8N9V2 468 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 SCFD1Q8WVM8 642 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 CCDC51Q96ER9 411 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 BICD1Q96G01 975 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 ADAM2Q99965 735 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 TARS2Q9BW92 718 aaKnown RBP18.79■□□□□ 0.6
LIG1-204ENST00000542460 TSPYL2Q9H2G4 693 aaPredicted RBP18.79■□□□□ 0.6
LIG1-204ENST00000542460 TMEM63CQ9P1W3 806 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 TNFSF13BQ9Y275 285 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 USP20Q9Y2K6 914 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 UBE4BO95155 1302 aa18.79■□□□□ 0.6
LIG1-204ENST00000542460 LTBP2Q14767 1821 aa18.78■□□□□ 0.6
LIG1-204ENST00000542460 MYH11P35749 1972 aa18.78■□□□□ 0.6
LIG1-204ENST00000542460 BIN1O00499 593 aa18.78■□□□□ 0.6
LIG1-204ENST00000542460 ENPP3O14638 875 aa18.78■□□□□ 0.6
LIG1-204ENST00000542460 HNRNPDLO14979 420 aaKnown RBP18.78■□□□□ 0.6
LIG1-204ENST00000542460 N4BP3O15049 544 aa18.78■□□□□ 0.6
LIG1-204ENST00000542460 MGEA5O60502 916 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms