RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-216	ENST00000541416	GBP2	P32456	591 aa	Predicted RBP	13.73	□□□□□ -0.21
SNHG1-216	ENST00000541416	AK2	P54819	239 aa		13.73	□□□□□ -0.21
SNHG1-216	ENST00000541416	PSMC5	P62195	406 aa		13.73	□□□□□ -0.21
SNHG1-216	ENST00000541416	SRGAP1	Q7Z6B7	1085 aa		13.73	□□□□□ -0.21
SNHG1-216	ENST00000541416	PSPC1	Q8WXF1	523 aa	Known RBP	13.73	□□□□□ -0.21
SNHG1-216	ENST00000541416	JAKMIP1	Q96N16	626 aa	Known RBP	13.73	□□□□□ -0.21
SNHG1-216	ENST00000541416	RHOBTB2	Q9BYZ6	727 aa		13.73	□□□□□ -0.21
SNHG1-216	ENST00000541416	VPS54	Q9P1Q0	977 aa		13.73	□□□□□ -0.21
SNHG1-216	ENST00000541416	COL4A3BP	Q9Y5P4	624 aa		13.73	□□□□□ -0.21
SNHG1-216	ENST00000541416	CYP3A7-CYP3A51P	A0A087WV96	503 aa		13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	CCDC195	A0A1B0GUA6	201 aa		13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	C2CD2L	O14523	706 aa		13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	NRP1	O14786	923 aa		13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	ADAMTS3	O15072	1205 aa		13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	GAS2	O43903	313 aa	Known RBP	13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	CDC45	O75419	566 aa		13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	GLUD1	P00367	558 aa		13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	SOD2	P04179	222 aa		13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	CYP3A7	P24462	503 aa		13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	PSMA5	P28066	241 aa		13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	PCBP1	Q15365	356 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	GALNT17	Q6IS24	598 aa		13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	ZC3H14	Q6PJT7	736 aa	Known RBP	13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	MOXD1	Q6UVY6	613 aa		13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	MRPL10	Q7Z7H8	261 aa	Known RBP	13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	ZNF280B	Q86YH2	543 aa		13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	HACE1	Q8IYU2	909 aa		13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	FAM177A1	Q8N128	213 aa	Predicted RBP	13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	FBXL16	Q8N461	479 aa		13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	BCL7C	Q8WUZ0	217 aa	Predicted RBP	13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	RPS6KC1	Q96S38	1066 aa		13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	SLK	Q9H2G2	1235 aa	Predicted RBP	13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	WDR6	Q9NNW5	1121 aa	Known RBP	13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	MAN1C1	Q9NR34	630 aa		13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	PCDHA4	Q9UN74	947 aa		13.72	□□□□□ -0.21
SNHG1-216	ENST00000541416	DMXL1	Q9Y485	3027 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	MEIS3P2	A8K0S8	358 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	ASAP2	O43150	1006 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	PI15	O43692	258 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	ERLIN2	O94905	339 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	C1R	P00736	705 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	LMNA	P02545	664 aa	Known RBP	13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	NPR3	P17342	541 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	RFC5	P40937	340 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	QARS	P47897	775 aa	Known RBP	13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	GLUD2	P49448	558 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	AGMO	Q6ZNB7	445 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	OTUD6A	Q7L8S5	288 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	KSR1	Q8IVT5	923 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	HDAC7	Q8WUI4	952 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	TCP11	Q8WWU5	503 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	CEP170P1	Q96L14	293 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	CEP89	Q96ST8	783 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	SH2D3A	Q9BRG2	576 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	HERC2P3	Q9BVR0	1158 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	VN1R3	Q9BXE9	311 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	PLEKHA4	Q9H4M7	779 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	PIDD1	Q9HB75	910 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	IFT122	Q9HBG6	1241 aa		13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
SNHG1-216	ENST00000541416	CLUH	O75153	1309 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	TMEM150B	A6NC51	233 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	CPLX1	O14810	134 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	INPPL1	O15357	1258 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	LILRB3	O75022	631 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	DDHD2	O94830	711 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	POMC	P01189	267 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	CFH	P08603	1231 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	SRGAP2C	P0DJJ0	459 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	SRF	P11831	508 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	ITGA4	P13612	1032 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	NCL	P19338	710 aa	Known RBP	13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	AXL	P30530	894 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	OR1G1	P47890	313 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	IRX6	P78412	446 aa	Predicted RBP	13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	CREM	Q03060	361 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	SSRP1	Q08945	709 aa	Known RBP	13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	NTRK3	Q16288	839 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	CPLX2	Q6PUV4	134 aa	Known RBP	13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	B3GNT9	Q6UX72	402 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	ANO5	Q75V66	913 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	BLID	Q8IZY5	108 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	PRPF31	Q8WWY3	499 aa	Known RBP	13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	SMG7	Q92540	1137 aa	Known RBP	13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	GJA10	Q969M2	543 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	CCDC51	Q96ER9	411 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	EPS15L1	Q9UBC2	864 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	DDX25	Q9UHL0	483 aa	Known RBP	13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	PRG3	Q9Y2Y8	225 aa	Predicted RBP	13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	C2orf16	Q68DN1	1984 aa		13.7	□□□□□ -0.22
SNHG1-216	ENST00000541416	TEX28	O15482	410 aa		13.69	□□□□□ -0.22
SNHG1-216	ENST00000541416	MARCH6	O60337	910 aa		13.69	□□□□□ -0.22
SNHG1-216	ENST00000541416	STBD1	O95210	358 aa		13.69	□□□□□ -0.22
SNHG1-216	ENST00000541416	DEXI	O95424	95 aa		13.69	□□□□□ -0.22
SNHG1-216	ENST00000541416	TDP2	O95551	362 aa		13.69	□□□□□ -0.22
SNHG1-216	ENST00000541416	P4HB	P07237	508 aa	Known RBP	13.69	□□□□□ -0.22
SNHG1-216	ENST00000541416	CPA1	P15085	419 aa		13.69	□□□□□ -0.22
SNHG1-216	ENST00000541416	RPS6KB1	P23443	525 aa		13.69	□□□□□ -0.22
SNHG1-216	ENST00000541416	PLA2G4F	Q68DD2	849 aa		13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms