RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 HS2ST1Q7LGA3 356 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 ARFGAP2Q8N6H7 521 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 LNX1Q8TBB1 728 aaPredicted RBP13.54□□□□□ -0.24
RNF4-222ENST00000541204 RIT2Q99578 217 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 TRIM31Q9BZY9 425 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 METTL14Q9HCE5 456 aaKnown RBP13.54□□□□□ -0.24
RNF4-222ENST00000541204 LRRC4CQ9HCJ2 640 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 AGO4Q9HCK5 861 aaKnown RBP13.54□□□□□ -0.24
RNF4-222ENST00000541204 GPRC5CQ9NQ84 441 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 AGPAT3Q9NRZ7 376 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 TCEAL9Q9UHQ7 104 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 SLC12A6Q9UHW9 1150 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 PPP1R9AQ9ULJ8 1098 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 DCDC2CA8MYV0 355 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 EVI5O60447 810 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 FSBPO95073 299 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 PSMC2P35998 433 aaKnown RBP13.54□□□□□ -0.24
RNF4-222ENST00000541204 ZNF280AP59817 542 aaPredicted RBP13.54□□□□□ -0.24
RNF4-222ENST00000541204 ANGEL2Q5VTE6 544 aaKnown RBP13.54□□□□□ -0.24
RNF4-222ENST00000541204 RNF207Q6ZRF8 634 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 GLYCTKQ8IVS8 523 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 SYCE1Q8N0S2 351 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 CYFIP2Q96F07 1278 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 HES6Q96HZ4 224 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 NOVA2Q9UNW9 492 aaKnown RBP13.54□□□□□ -0.24
RNF4-222ENST00000541204 NR2E1Q9Y466 385 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 A0A0A6YYK5 440 aaPredicted RBP13.54□□□□□ -0.24
RNF4-222ENST00000541204 BUB1BO60566 1050 aaPredicted RBP13.54□□□□□ -0.24
RNF4-222ENST00000541204 EXOC3O60645 756 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 FGGP02679 453 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 ABCB4P21439 1286 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 PGM5Q15124 567 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 ARHGEF16Q5VV41 709 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 PLA2G4FQ68DD2 849 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 B3GNT9Q6UX72 402 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 DLK2Q6UY11 383 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 TMC3Q7Z5M5 1100 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 ADAT2Q7Z6V5 191 aaKnown RBP13.54□□□□□ -0.24
RNF4-222ENST00000541204 YTHDF3Q7Z739 585 aaKnown RBP13.54□□□□□ -0.24
RNF4-222ENST00000541204 CCDC26Q8TAB7 109 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 SLITRK6Q9H5Y7 841 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 CNOT8Q9UFF9 292 aaKnown RBP13.54□□□□□ -0.24
RNF4-222ENST00000541204 BACH1O14867 736 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 SLC16A3O15427 465 aaKnown RBP13.53□□□□□ -0.24
RNF4-222ENST00000541204 ZBED4O75132 1171 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 P4HBP07237 508 aaKnown RBP13.53□□□□□ -0.24
RNF4-222ENST00000541204 MNAT1P51948 309 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 NPEPPSP55786 919 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 DHX9Q08211 1270 aaKnown RBP13.53□□□□□ -0.24
RNF4-222ENST00000541204 MAPK7Q13164 816 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 BAATQ14032 418 aaPredicted RBP13.53□□□□□ -0.24
RNF4-222ENST00000541204 CBWD6Q4V339 395 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 CBWD3Q5JTY5 395 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 CBWD5Q5RIA9 395 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 RUFY4Q6ZNE9 571 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 SLC35G2Q8TBE7 412 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 TRIM51Q9BSJ1 452 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 AMFRQ9UKV5 643 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 FRMD4BQ9Y2L6 1034 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 UTP11Q9Y3A2 253 aaKnown RBP13.53□□□□□ -0.24
RNF4-222ENST00000541204 RPTORQ8N122 1335 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 GMNCA6NCL1 334 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 VWA5AO00534 786 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 EIF3DO15371 548 aaKnown RBP eCLIP13.53□□□□□ -0.24
RNF4-222ENST00000541204 PPP1R12BO60237 982 aaPredicted RBP13.53□□□□□ -0.24
RNF4-222ENST00000541204 FERP16591 822 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 ANXA13P27216 316 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 COPB2P35606 906 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 STAT1P42224 750 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 BIRC3Q13489 604 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 PRPF4BQ13523 1007 aaKnown RBP13.53□□□□□ -0.24
RNF4-222ENST00000541204 MTMR3Q13615 1198 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 R3HDM1Q15032 1099 aaKnown RBP13.53□□□□□ -0.24
RNF4-222ENST00000541204 PCNX4Q63HM2 1172 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 ZSWIM2Q8NEG5 633 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 OLIG1Q8TAK6 271 aa13.53□□□□□ -0.24
RNF4-222ENST00000541204 IGSF9BQ9UPX0 1349 aa13.52□□□□□ -0.24
RNF4-222ENST00000541204 ZNF131P52739 623 aa13.52□□□□□ -0.24
RNF4-222ENST00000541204 PPP2R2AP63151 447 aa13.52□□□□□ -0.24
RNF4-222ENST00000541204 QPCTQ16769 361 aa13.52□□□□□ -0.24
RNF4-222ENST00000541204 DCAF12L1Q5VU92 463 aa13.52□□□□□ -0.24
RNF4-222ENST00000541204 SLC30A5Q8TAD4 765 aa13.52□□□□□ -0.24
RNF4-222ENST00000541204 BORCS6Q96GS4 357 aa13.52□□□□□ -0.24
RNF4-222ENST00000541204 RNF146Q9NTX7 359 aa13.52□□□□□ -0.24
RNF4-222ENST00000541204 INTUQ9ULD6 942 aa13.52□□□□□ -0.24
RNF4-222ENST00000541204 TELO2Q9Y4R8 837 aa13.52□□□□□ -0.24
RNF4-222ENST00000541204 UBIAD1Q9Y5Z9 338 aa13.52□□□□□ -0.24
RNF4-222ENST00000541204 ZNF541Q9H0D2 1346 aa13.52□□□□□ -0.25
RNF4-222ENST00000541204 F8VZ95 297 aa13.52□□□□□ -0.25
RNF4-222ENST00000541204 TRAPPC3O43617 180 aa13.52□□□□□ -0.25
RNF4-222ENST00000541204 PEX10O60683 326 aa13.52□□□□□ -0.25
RNF4-222ENST00000541204 LRRN2O75325 713 aa13.52□□□□□ -0.25
RNF4-222ENST00000541204 YWHABP31946 246 aaKnown RBP13.52□□□□□ -0.25
RNF4-222ENST00000541204 QARSP47897 775 aaKnown RBP13.52□□□□□ -0.25
RNF4-222ENST00000541204 RARRES1P49788 294 aa13.52□□□□□ -0.25
RNF4-222ENST00000541204 SOX10P56693 466 aa13.52□□□□□ -0.25
RNF4-222ENST00000541204 MAGOHP61326 146 aaKnown RBP13.52□□□□□ -0.25
RNF4-222ENST00000541204 DLG4P78352 724 aa13.52□□□□□ -0.25
RNF4-222ENST00000541204 KRT71Q3SY84 523 aa13.52□□□□□ -0.25
RNF4-222ENST00000541204 SNRNP48Q6IEG0 339 aaKnown RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms