RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 B4GALT3O60512 393 aa16.66■□□□□ 0.26
UBE3B-212ENST00000540230 HIP1RO75146 1068 aa16.66■□□□□ 0.26
UBE3B-212ENST00000540230 OFD1O75665 1012 aa16.66■□□□□ 0.26
UBE3B-212ENST00000540230 AXLP30530 894 aa16.66■□□□□ 0.26
UBE3B-212ENST00000540230 IRS1P35568 1242 aa16.66■□□□□ 0.26
UBE3B-212ENST00000540230 SLC12A3P55017 1021 aa16.66■□□□□ 0.26
UBE3B-212ENST00000540230 RAD51AP2Q09MP3 1159 aa16.66■□□□□ 0.26
UBE3B-212ENST00000540230 KARSQ15046 597 aaKnown RBP16.66■□□□□ 0.26
UBE3B-212ENST00000540230 TCEAL5Q5H9L2 206 aa16.66■□□□□ 0.26
UBE3B-212ENST00000540230 NOTUMQ6P988 496 aa16.66■□□□□ 0.26
UBE3B-212ENST00000540230 POF1BQ8WVV4 589 aa16.66■□□□□ 0.26
UBE3B-212ENST00000540230 CLIC6Q96NY7 704 aa16.66■□□□□ 0.26
UBE3B-212ENST00000540230 NT5C3AQ9H0P0 336 aa16.66■□□□□ 0.26
UBE3B-212ENST00000540230 CSRNP2Q9H175 543 aa16.66■□□□□ 0.26
UBE3B-212ENST00000540230 RNF39Q9H2S5 420 aa16.66■□□□□ 0.26
UBE3B-212ENST00000540230 FZD8Q9H461 694 aa16.66■□□□□ 0.26
UBE3B-212ENST00000540230 INPP5FQ9Y2H2 1132 aa16.66■□□□□ 0.26
UBE3B-212ENST00000540230 IPPQ9Y573 584 aa16.66■□□□□ 0.26
UBE3B-212ENST00000540230 PCDHGC5Q9Y5F6 944 aa16.66■□□□□ 0.26
UBE3B-212ENST00000540230 FGF18O76093 207 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 SSBP05455 408 aaKnown RBP eCLIP16.65■□□□□ 0.26
UBE3B-212ENST00000540230 SKIP12755 728 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 LIG1P18858 919 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 NCLP19338 710 aaKnown RBP16.65■□□□□ 0.26
UBE3B-212ENST00000540230 LONP1P36776 959 aaKnown RBP16.65■□□□□ 0.26
UBE3B-212ENST00000540230 PCBP1Q15365 356 aaKnown RBP eCLIP16.65■□□□□ 0.26
UBE3B-212ENST00000540230 PPP4R3CPQ6ZMV5 832 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 ZBTB8OSQ8IWT0 167 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 SYT2Q8N9I0 419 aaPredicted RBP16.65■□□□□ 0.26
UBE3B-212ENST00000540230 KIFAP3Q92845 792 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 EPSTI1Q96J88 318 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 CDK5RAP3Q96JB5 506 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 LMAN2LQ9H0V9 348 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 NXF3Q9H4D5 531 aaKnown RBP16.65■□□□□ 0.26
UBE3B-212ENST00000540230 ZSCAN16Q9H4T2 348 aaPredicted RBP16.65■□□□□ 0.26
UBE3B-212ENST00000540230 BLOC1S4Q9NUP1 217 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 TBC1D13Q9NVG8 400 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 PCDHB12Q9Y5F1 795 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 MYH11P35749 1972 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 NPHP3-ACAD11A0A0J9YXS1 232 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 SFI1A8K8P3 1242 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 HSP90AA1P07900 732 aaKnown RBP16.65■□□□□ 0.26
UBE3B-212ENST00000540230 PLA2G4BP0C869 781 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 LAG3P18627 525 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 PLCG1P19174 1290 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 UBA7P41226 1012 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 PEX3P56589 373 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 CACNB1Q02641 598 aaPredicted RBP16.65■□□□□ 0.26
UBE3B-212ENST00000540230 FAM187BQ17R55 369 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 TIGD5Q53EQ6 642 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 NAALADL2Q58DX5 795 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 KCNT2Q6UVM3 1135 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 GLB1LQ6UWU2 654 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 THNSL1Q8IYQ7 743 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 DEPTORQ8TB45 409 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 C2orf40Q9H1Z8 148 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 NSUN3Q9H649 340 aaKnown RBP16.65■□□□□ 0.26
UBE3B-212ENST00000540230 RSAD1Q9HA92 442 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 PRMT7Q9NVM4 692 aaPredicted RBP16.65■□□□□ 0.26
UBE3B-212ENST00000540230 CNTNAP2Q9UHC6 1331 aa16.65■□□□□ 0.26
UBE3B-212ENST00000540230 A0A1B0GUA9 196 aa16.64■□□□□ 0.25
UBE3B-212ENST00000540230 NT5C1B-RDH14C9J2C7 533 aa16.64■□□□□ 0.25
UBE3B-212ENST00000540230 NPTXRO95502 500 aa16.64■□□□□ 0.25
UBE3B-212ENST00000540230 PRKCBP05771 671 aa16.64■□□□□ 0.25
UBE3B-212ENST00000540230 GUCY2CP25092 1073 aa16.64■□□□□ 0.25
UBE3B-212ENST00000540230 NPTX2P47972 431 aa16.64■□□□□ 0.25
UBE3B-212ENST00000540230 PPP2R5AQ15172 486 aa16.64■□□□□ 0.25
UBE3B-212ENST00000540230 ARSHQ5FYA8 562 aa16.64■□□□□ 0.25
UBE3B-212ENST00000540230 NOMO2Q5JPE7 1267 aa16.64■□□□□ 0.25
UBE3B-212ENST00000540230 ADGRD2Q7Z7M1 963 aa16.64■□□□□ 0.25
UBE3B-212ENST00000540230 TMEM173Q86WV6 379 aaPredicted RBP16.64■□□□□ 0.25
UBE3B-212ENST00000540230 PGBD4Q96DM1 585 aa16.64■□□□□ 0.25
UBE3B-212ENST00000540230 CCDC51Q96ER9 411 aa16.64■□□□□ 0.25
UBE3B-212ENST00000540230 IFT74Q96LB3 600 aa16.64■□□□□ 0.25
UBE3B-212ENST00000540230 PRIMPOLQ96LW4 560 aa16.64■□□□□ 0.25
UBE3B-212ENST00000540230 APOL6Q9BWW8 343 aa16.64■□□□□ 0.25
UBE3B-212ENST00000540230 MRPL9Q9BYD2 267 aaKnown RBP16.64■□□□□ 0.25
UBE3B-212ENST00000540230 NRDE2Q9H7Z3 1164 aa16.64■□□□□ 0.25
UBE3B-212ENST00000540230 AAASQ9NRG9 546 aa16.64■□□□□ 0.25
UBE3B-212ENST00000540230 DNAJB4Q9UDY4 337 aa16.64■□□□□ 0.25
UBE3B-212ENST00000540230 SRPRBQ9Y5M8 271 aaKnown RBP16.64■□□□□ 0.25
UBE3B-212ENST00000540230 ZC3H11AO75152 810 aaKnown RBP eCLIP16.63■□□□□ 0.25
UBE3B-212ENST00000540230 ITGA4P13612 1032 aa16.63■□□□□ 0.25
UBE3B-212ENST00000540230 GTF2F1P35269 517 aaKnown RBP eCLIP16.63■□□□□ 0.25
UBE3B-212ENST00000540230 BCAR1P56945 870 aa16.63■□□□□ 0.25
UBE3B-212ENST00000540230 DHX8Q14562 1220 aaKnown RBP16.63■□□□□ 0.25
UBE3B-212ENST00000540230 MAPK6Q16659 721 aa16.63■□□□□ 0.25
UBE3B-212ENST00000540230 FOXD4L6Q3SYB3 417 aaPredicted RBP16.63■□□□□ 0.25
UBE3B-212ENST00000540230 EEF1DP3Q658K8 133 aa16.63■□□□□ 0.25
UBE3B-212ENST00000540230 SLC27A1Q6PCB7 646 aa16.63■□□□□ 0.25
UBE3B-212ENST00000540230 FOXD4L3Q6VB84 417 aaPredicted RBP16.63■□□□□ 0.25
UBE3B-212ENST00000540230 TAS1R3Q7RTX0 852 aa16.63■□□□□ 0.25
UBE3B-212ENST00000540230 ZNF280BQ86YH2 543 aa16.63■□□□□ 0.25
UBE3B-212ENST00000540230 CALML4Q96GE6 196 aa16.63■□□□□ 0.25
UBE3B-212ENST00000540230 ZNF558Q96NG5 402 aa16.63■□□□□ 0.25
UBE3B-212ENST00000540230 CCSER1Q9C0I3 900 aa16.63■□□□□ 0.25
UBE3B-212ENST00000540230 PDZD7Q9H5P4 517 aa16.63■□□□□ 0.25
UBE3B-212ENST00000540230 TFIP11Q9UBB9 837 aaKnown RBP16.63■□□□□ 0.25
UBE3B-212ENST00000540230 CCDC169A6NNP5 214 aa16.62■□□□□ 0.25
UBE3B-212ENST00000540230 ACKR2O00590 384 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms