RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 PAPLNO95428 1278 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 SOD2P04179 222 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 URODP06132 367 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 GNA11P29992 359 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 AK2P54819 239 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 MTERF2Q49AM1 385 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 XKR3Q5GH77 459 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 AGMOQ6ZNB7 445 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 DHX32Q7L7V1 743 aaKnown RBP13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 RHPN2Q8IUC4 686 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 CCDC12Q8WUD4 166 aaPredicted RBP13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 HDAC7Q8WUI4 952 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 SLC5A5Q92911 643 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 BORCS6Q96GS4 357 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 SEPT9Q9UHD8 586 aaPredicted RBP13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 CEP250Q9BV73 2442 aa13.07□□□□□ -0.32
CLSTN3-209ENST00000539982 ANHXE9PGG2 379 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 CHMP2AO43633 222 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 MAFO75444 373 aaPredicted RBP13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 GLUD1P00367 558 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 C1RP00736 705 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 LAMP2P13473 410 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 ADD1P35611 737 aaKnown RBP13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 USP11P51784 963 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 AFF1P51825 1210 aaKnown RBP13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 RCAN1P53805 252 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 KIAA0319Q5VV43 1072 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 DCLRE1AQ6PJP8 1040 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 TAS1R1Q7RTX1 841 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 KSR1Q8IVT5 923 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 SUMF1Q8NBK3 374 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 RDM1Q8NG50 284 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 SMG7Q92540 1137 aaKnown RBP13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 ZNF707Q96C28 371 aaPredicted RBP13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 CCDC136Q96JN2 1154 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 TCEANC2Q96MN5 208 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 ESYT1Q9BSJ8 1104 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 HERC2P3Q9BVR0 1158 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 TEKT3Q9BXF9 490 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 UNC45AQ9H3U1 944 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 RSAD1Q9HA92 442 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 RXFP1Q9HBX9 757 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 ARHGEF3Q9NR81 526 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 SLC2A4RGQ9NR83 387 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 CNTNAP2Q9UHC6 1331 aa13.06□□□□□ -0.32
CLSTN3-209ENST00000539982 CACNA1BQ00975 2339 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 KLF18A0A0U1RQI7 1052 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 CCDC196A0A1B0GTZ2 297 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 TMEM150BA6NC51 233 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 EDIL3O43854 480 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 RFPL2O75678 378 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 EFEMP2O95967 443 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 POMCP01189 267 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 MYBP10242 640 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 RSPO4Q2I0M5 234 aaPredicted RBP13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 RNF20Q5VTR2 975 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 LRCH2Q5VUJ6 765 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 BICD2Q8TD16 824 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 NLRP4Q96MN2 994 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 CNTNAP3BQ96NU0 1288 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 SH2D3AQ9BRG2 576 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 CNTNAP3Q9BZ76 1288 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 NT5C3AQ9H0P0 336 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 PLEKHA4Q9H4M7 779 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 PIDD1Q9HB75 910 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 IFT122Q9HBG6 1241 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 AGPAT5Q9NUQ2 364 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 EPG5Q9HCE0 2579 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 FANCMQ8IYD8 2048 aa13.05□□□□□ -0.32
CLSTN3-209ENST00000539982 DDX11L8A8MPP1 907 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 PRPF3O43395 683 aaKnown RBP13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 GAS2O43903 313 aaKnown RBP13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 KINO60870 393 aaKnown RBP13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 PSMD10O75832 226 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 KRT37O76014 449 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 SPATA31D3P0C874 917 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 GLULP15104 373 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 SDHBP21912 280 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 HOXA11P31270 313 aaPredicted RBP13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 GLUD2P49448 558 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 STARD6P59095 220 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 HTR4Q13639 388 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 ZNF528Q3MIS6 628 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 UBXN11Q5T124 520 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 SPATA31D4Q6ZUB0 917 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 MIER3Q7Z3K6 550 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 COLGALT2Q8IYK4 626 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 RNF168Q8IYW5 571 aaPredicted RBP13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 MAML2Q8IZL2 1156 aaPredicted RBP13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 PJA1Q8NG27 643 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 SHDQ96IW2 340 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 JPH2Q9BR39 696 aaPredicted RBP13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 UBN1Q9NPG3 1134 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 ANO2Q9NQ90 1003 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 MARCH5Q9NX47 278 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 ZDHHC7Q9NXF8 308 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 ZFP37Q9Y6Q3 630 aaPredicted RBP13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 CACNA1IQ9P0X4 2223 aa13.04□□□□□ -0.32
CLSTN3-209ENST00000539982 POTEMA6NI47 508 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms