RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	ENPP1	P22413	925 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296	MAN2A2	P49641	1150 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296	ZXDA	P98168	799 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296	SAFB2	Q14151	953 aa	Known RBP eCLIP	3.85	□□□□□ -1.79
CD44-238	ENST00000534296	CDSN	Q15517	529 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296	FSCN1	Q16658	493 aa	Known RBP	3.85	□□□□□ -1.79
CD44-238	ENST00000534296	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	3.85	□□□□□ -1.79
CD44-238	ENST00000534296	RNF219	Q5W0B1	726 aa	Predicted RBP	3.85	□□□□□ -1.79
CD44-238	ENST00000534296	PDZD4	Q76G19	769 aa	Predicted RBP	3.85	□□□□□ -1.79
CD44-238	ENST00000534296	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	3.85	□□□□□ -1.79
CD44-238	ENST00000534296	GGN	Q86UU5	652 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296	SPATS2	Q86XZ4	545 aa	Known RBP	3.85	□□□□□ -1.79
CD44-238	ENST00000534296	AFAP1L2	Q8N4X5	818 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296	CLRN3	Q8NCR9	226 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296	PPP1R14C	Q8TAE6	165 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296	WDR66	Q8TBY9	1149 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296	KCTD10	Q9H3F6	313 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296	AGO3	Q9H9G7	860 aa	Known RBP	3.85	□□□□□ -1.79
CD44-238	ENST00000534296	SPC25	Q9HBM1	224 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296	CLCA2	Q9UQC9	943 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296	SH3BP1	Q9Y3L3	701 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296	CDY2A	Q9Y6F7	541 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296	WASHC2A	Q641Q2	1341 aa		3.85	□□□□□ -1.79
CD44-238	ENST00000534296		A0A0A6YYK5	440 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-238	ENST00000534296	GOLGA8A	A7E2F4	631 aa		3.84	□□□□□ -1.79
CD44-238	ENST00000534296	DNAJC6	O75061	913 aa		3.84	□□□□□ -1.79
CD44-238	ENST00000534296	PHF2	O75151	1096 aa		3.84	□□□□□ -1.79
CD44-238	ENST00000534296	PPFIA4	O75335	1185 aa		3.84	□□□□□ -1.79
CD44-238	ENST00000534296	LTA4H	P09960	611 aa	Known RBP	3.84	□□□□□ -1.79
CD44-238	ENST00000534296	LGALS4	P56470	323 aa		3.84	□□□□□ -1.79
CD44-238	ENST00000534296	KRTAP10-2	P60368	255 aa		3.84	□□□□□ -1.79
CD44-238	ENST00000534296	CD69	Q07108	199 aa		3.84	□□□□□ -1.79
CD44-238	ENST00000534296	STAT4	Q14765	748 aa		3.84	□□□□□ -1.79
CD44-238	ENST00000534296	DCAF17	Q5H9S7	520 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-238	ENST00000534296		Q6ZSN1	163 aa		3.84	□□□□□ -1.79
CD44-238	ENST00000534296	TAS1R1	Q7RTX1	841 aa		3.84	□□□□□ -1.79
CD44-238	ENST00000534296	GLB1L3	Q8NCI6	653 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-238	ENST00000534296	ATXN2L	Q8WWM7	1075 aa	Known RBP	3.84	□□□□□ -1.79
CD44-238	ENST00000534296	AUTS2	Q8WXX7	1259 aa		3.84	□□□□□ -1.79
CD44-238	ENST00000534296	ST8SIA2	Q92186	375 aa		3.84	□□□□□ -1.79
CD44-238	ENST00000534296	IL17RA	Q96F46	866 aa		3.84	□□□□□ -1.79
CD44-238	ENST00000534296	AHCYL2	Q96HN2	611 aa	Known RBP	3.84	□□□□□ -1.79
CD44-238	ENST00000534296	ZNF512	Q96ME7	567 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-238	ENST00000534296	FAM193B	Q96PV7	902 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-238	ENST00000534296	CDC5L	Q99459	802 aa	Known RBP	3.84	□□□□□ -1.79
CD44-238	ENST00000534296	SOX7	Q9BT81	388 aa		3.84	□□□□□ -1.79
CD44-238	ENST00000534296	KRTAP9-3	Q9BYQ3	159 aa		3.84	□□□□□ -1.79
CD44-238	ENST00000534296	MS4A5	Q9H3V2	200 aa		3.84	□□□□□ -1.79
CD44-238	ENST00000534296	TOPORS	Q9NS56	1045 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-238	ENST00000534296	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	3.84	□□□□□ -1.79
CD44-238	ENST00000534296	KRTAP23-1	A1A580	65 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	LCHN	A4D1U4	455 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	RECQL4	O94761	1208 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	AMH	P03971	560 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	HSP90B1	P14625	803 aa	Known RBP	3.83	□□□□□ -1.8
CD44-238	ENST00000534296	ID4	P47928	161 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	SLC5A3	P53794	718 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	ADAM8	P78325	824 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	MRPS9	P82933	396 aa	Known RBP	3.83	□□□□□ -1.8
CD44-238	ENST00000534296	PTH1R	Q03431	593 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	ABHD18	Q0P651	414 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	FOXE3	Q13461	319 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	ACAP1	Q15027	740 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	CT83	Q5H943	113 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	PITRM1	Q5JRX3	1037 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	EGFLAM	Q63HQ2	1017 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	FAM83A	Q86UY5	434 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	AMOTL1	Q8IY63	956 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	MB21D1	Q8N884	522 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	PIK3C3	Q8NEB9	887 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	ZNF480	Q8WV37	535 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	PLEKHG4B	Q96PX9	1271 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	GPR87	Q9BY21	358 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	TMPRSS5	Q9H3S3	457 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	ING3	Q9NXR8	418 aa		3.83	□□□□□ -1.8
CD44-238	ENST00000534296	HECA	Q9UBI9	543 aa	Predicted RBP	3.83	□□□□□ -1.8
CD44-238	ENST00000534296	EVL	Q9UI08	416 aa	Predicted RBP	3.83	□□□□□ -1.8
CD44-238	ENST00000534296	RPTOR	Q8N122	1335 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296		A0A1W2PR48	441 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296	PRR5-ARHGAP8	B1AHC4	643 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296	GPR39	O43194	453 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296	GAST	P01350	101 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296	LPL	P06858	475 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296	NCL	P19338	710 aa	Known RBP	3.82	□□□□□ -1.8
CD44-238	ENST00000534296	MCM7	P33993	719 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296	GZMK	P49863	264 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296	SCAND1	P57086	179 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296	RRP1B	Q14684	758 aa	Known RBP	3.82	□□□□□ -1.8
CD44-238	ENST00000534296	C19orf54	Q5BKX5	351 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296	MIIP	Q5JXC2	388 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296	CRIP3	Q6Q6R5	217 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296	STRA8	Q7Z7C7	330 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296	TMPRSS6	Q8IU80	811 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296	SYNE4	Q8N205	404 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296	MDGA1	Q8NFP4	955 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296	EXTL1	Q92935	676 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296	EAF2	Q96CJ1	260 aa	Predicted RBP	3.82	□□□□□ -1.8
CD44-238	ENST00000534296	CPPED1	Q9BRF8	314 aa	Predicted RBP	3.82	□□□□□ -1.8
CD44-238	ENST00000534296	PDCD2L	Q9BRP1	358 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296	FDXACB1	Q9BRP7	624 aa	Predicted RBP	3.82	□□□□□ -1.8

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