RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	SUCLA2	Q9P2R7	463 aa	Predicted RBP	10.38	□□□□□ -0.75
NXF1-209	ENST00000531474	RSPH10B2	B2RC85	870 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474		M0QZ92	97 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	PITPNM1	O00562	1244 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	CAND2	O75155	1236 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	TIMP1	P01033	207 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	RSPH10B	P0C881	870 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	SELP	P16109	830 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	SLC12A3	P55017	1021 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	CCL23	P55773	120 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	MLLT1	Q03111	559 aa	Predicted RBP	10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	UBXN1	Q04323	297 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	EHHADH	Q08426	723 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	RAD51AP2	Q09MP3	1159 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	STK4	Q13043	487 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	MKRN4P	Q13434	485 aa	Predicted RBP	10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	ZNF618	Q5T7W0	954 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	IER5	Q5VY09	327 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	ANKRD40	Q6AI12	368 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	RINT1	Q6NUQ1	792 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	RPAIN	Q86UA6	219 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	RHPN2	Q8IUC4	686 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	TMTC1	Q8IUR5	882 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	MYOCD	Q8IZQ8	938 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	NME8	Q8N427	588 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	PSPC1	Q8WXF1	523 aa	Known RBP	10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	SPOCK2	Q92563	424 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	DNAJC19	Q96DA6	116 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	GPRC5C	Q9NQ84	441 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	GINS2	Q9Y248	185 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	TRPV2	Q9Y5S1	764 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	CDY2A	Q9Y6F7	541 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	ALPK3	Q96L96	1907 aa		10.37	□□□□□ -0.75
NXF1-209	ENST00000531474	MYH9	P35579	1960 aa	Known RBP	10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	ARID2	Q68CP9	1835 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	NPHP3-ACAD11	A0A0J9YXS1	232 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	LGALS16	A8MUM7	142 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	DYNC1I1	O14576	645 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	GAP43	P17677	238 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	ITGB8	P26012	769 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	NLRP11	P59045	1033 aa	Known RBP	10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	FKBP3	Q00688	224 aa	Known RBP	10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	RBL2	Q08999	1139 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	LAMTOR4	Q0VGL1	99 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	ARID5B	Q14865	1188 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	KIZ	Q2M2Z5	673 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	HSP90AA4P	Q58FG1	418 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	FAM26F	Q5R3K3	315 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	FKBP15	Q5T1M5	1219 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	CEP135	Q66GS9	1140 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	C1orf186	Q6ZWK4	172 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	DYM	Q7RTS9	669 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	KSR1	Q8IVT5	923 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	TC2N	Q8N9U0	490 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	ZNF397	Q8NF99	534 aa	Predicted RBP	10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	MYRIP	Q8NFW9	859 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	KIF18A	Q8NI77	898 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	ASAP3	Q8TDY4	903 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	PRPF31	Q8WWY3	499 aa	Known RBP	10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	NLRP7	Q8WX94	980 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	SCLY	Q96I15	445 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	ZNF668	Q96K58	619 aa	Predicted RBP	10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	NLRP4	Q96MN2	994 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	CEP63	Q96MT8	703 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	DUSP9	Q99956	384 aa	Known RBP	10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	LBHD1	Q9BQE6	289 aa	Predicted RBP	10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	TUBGCP2	Q9BSJ2	902 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	CELF4	Q9BZC1	486 aa	Known RBP	10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	WNT8A	Q9H1J5	351 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	VPS16	Q9H269	839 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	POLD4	Q9HCU8	107 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	SLC39A2	Q9NP94	309 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	MAPK8IP1	Q9UQF2	711 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	COL4A3BP	Q9Y5P4	624 aa		10.36	□□□□□ -0.75
NXF1-209	ENST00000531474	BRCA2	P51587	3418 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	WDR81	Q562E7	1941 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	FRMD3	A2A2Y4	597 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474		H0YGN5	161 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	TEX33	O43247	280 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	HIP1R	O75146	1068 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	TBCA	O75347	108 aa	Known RBP	10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	CHRNA1	P02708	482 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	IQCF3	P0C7M6	154 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	SRGAP2C	P0DJJ0	459 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	GUCY2C	P25092	1073 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	ARL2	P36404	184 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	MTIF2	P46199	727 aa	Known RBP	10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	GPC3	P51654	580 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	CACNB1	Q02641	598 aa	Predicted RBP	10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	MGAT3	Q09327	533 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	COASY	Q13057	564 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	TFDP1	Q14186	410 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	ARSH	Q5FYA8	562 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	HERC4	Q5GLZ8	1057 aa	Predicted RBP	10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	FIGN	Q5HY92	759 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	FAM26D	Q5JW98	314 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	MFSD5	Q6N075	450 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	TRAF7	Q6Q0C0	670 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	NYAP1	Q6ZVC0	841 aa		10.35	□□□□□ -0.75
NXF1-209	ENST00000531474	STXBP4	Q6ZWJ1	553 aa		10.35	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 31 ms