RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 MYH11P35749 1972 aa20.64■□□□□ 0.89
VPS28-207ENST00000526977 CALUO43852 315 aaPredicted RBP20.64■□□□□ 0.89
VPS28-207ENST00000526977 MSCO60682 206 aa20.64■□□□□ 0.89
VPS28-207ENST00000526977 NAMPTP43490 491 aa20.64■□□□□ 0.89
VPS28-207ENST00000526977 KCNMA1Q12791 1236 aa20.64■□□□□ 0.89
VPS28-207ENST00000526977 PPFIA1Q13136 1202 aa20.64■□□□□ 0.89
VPS28-207ENST00000526977 MXD4Q14582 209 aaPredicted RBP20.64■□□□□ 0.89
VPS28-207ENST00000526977 KIAA0753Q2KHM9 967 aa20.64■□□□□ 0.89
VPS28-207ENST00000526977 ACRBPQ8NEB7 543 aa20.64■□□□□ 0.89
VPS28-207ENST00000526977 BSNDQ8WZ55 320 aa20.64■□□□□ 0.89
VPS28-207ENST00000526977 HVCN1Q96D96 273 aa20.64■□□□□ 0.89
VPS28-207ENST00000526977 MMRN2Q9H8L6 949 aa20.64■□□□□ 0.89
VPS28-207ENST00000526977 TYW1Q9NV66 732 aaKnown RBP20.64■□□□□ 0.89
VPS28-207ENST00000526977 NRCAMQ92823 1304 aa20.64■□□□□ 0.89
VPS28-207ENST00000526977 HAS3O00219 553 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 EPHB6O15197 1021 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 SLC16A4O15374 487 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 C22orf31O95567 290 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 KLRC1P26715 233 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 IRX5P78411 483 aaPredicted RBP20.63■□□□□ 0.89
VPS28-207ENST00000526977 PURAQ00577 322 aaKnown RBP20.63■□□□□ 0.89
VPS28-207ENST00000526977 MFSD10Q14728 455 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 EFCAB12Q6NXP0 572 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 TMEM161BQ8NDZ6 487 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 ZNF397Q8NF99 534 aaPredicted RBP20.63■□□□□ 0.89
VPS28-207ENST00000526977 TRAPPC12Q8WVT3 735 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 PSPC1Q8WXF1 523 aaKnown RBP20.63■□□□□ 0.89
VPS28-207ENST00000526977 KCNN1Q92952 543 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 DDX20Q9UHI6 824 aaKnown RBP20.63■□□□□ 0.89
VPS28-207ENST00000526977 TGFB1I1O43294 461 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 ADAMTS4O75173 837 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 PGK1P00558 417 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 INHAP05111 366 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 GLRA2P23416 452 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 GNG11P61952 73 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 IGBP1P78318 339 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 GRIK4Q16099 956 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 ACCSQ96QU6 501 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 HMX1Q9NP08 348 aaPredicted RBP20.63■□□□□ 0.89
VPS28-207ENST00000526977 FAM207AQ9NSI2 230 aaPredicted RBP20.63■□□□□ 0.89
VPS28-207ENST00000526977 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.63■□□□□ 0.89
VPS28-207ENST00000526977 PTCH2Q9Y6C5 1203 aa20.63■□□□□ 0.89
VPS28-207ENST00000526977 ASAP2O43150 1006 aa20.62■□□□□ 0.89
VPS28-207ENST00000526977 NDUFA10O95299 355 aa20.62■□□□□ 0.89
VPS28-207ENST00000526977 TMOD1P28289 359 aa20.62■□□□□ 0.89
VPS28-207ENST00000526977 PSEN2P49810 448 aa20.62■□□□□ 0.89
VPS28-207ENST00000526977 FRMD5Q7Z6J6 570 aa20.62■□□□□ 0.89
VPS28-207ENST00000526977 METTL13Q8N6R0 699 aa20.62■□□□□ 0.89
VPS28-207ENST00000526977 GOLGA5Q8TBA6 731 aa20.62■□□□□ 0.89
VPS28-207ENST00000526977 PRPF31Q8WWY3 499 aaKnown RBP20.62■□□□□ 0.89
VPS28-207ENST00000526977 WDR24Q96S15 920 aa20.62■□□□□ 0.89
VPS28-207ENST00000526977 GBP3Q9H0R5 595 aa20.62■□□□□ 0.89
VPS28-207ENST00000526977 L2HGDHQ9H9P8 463 aa20.62■□□□□ 0.89
VPS28-207ENST00000526977 LZTFL1Q9NQ48 299 aa20.62■□□□□ 0.89
VPS28-207ENST00000526977 ZNHIT6Q9NWK9 470 aaKnown RBP20.62■□□□□ 0.89
VPS28-207ENST00000526977 EXOC7Q9UPT5 735 aa20.62■□□□□ 0.89
VPS28-207ENST00000526977 MKRN4PQ13434 485 aaPredicted RBP20.61■□□□□ 0.89
VPS28-207ENST00000526977 MTHFD1LQ6UB35 978 aa20.61■□□□□ 0.89
VPS28-207ENST00000526977 HS2ST1Q7LGA3 356 aa20.61■□□□□ 0.89
VPS28-207ENST00000526977 SYCP3Q8IZU3 236 aa20.61■□□□□ 0.89
VPS28-207ENST00000526977 ASAP3Q8TDY4 903 aa20.61■□□□□ 0.89
VPS28-207ENST00000526977 MTG1Q9BT17 334 aaPredicted RBP20.61■□□□□ 0.89
VPS28-207ENST00000526977 ARHGAP28Q9P2N2 729 aa20.61■□□□□ 0.89
VPS28-207ENST00000526977 SUCLA2Q9P2R7 463 aaPredicted RBP20.61■□□□□ 0.89
VPS28-207ENST00000526977 MYADML2A6NDP7 307 aa20.61■□□□□ 0.89
VPS28-207ENST00000526977 NR3C1P04150 777 aa20.61■□□□□ 0.89
VPS28-207ENST00000526977 SMIM10L2AP0DMW4 78 aa20.61■□□□□ 0.89
VPS28-207ENST00000526977 SMIM10L2BP0DMW5 78 aa20.61■□□□□ 0.89
VPS28-207ENST00000526977 RPL13P26373 211 aaKnown RBP20.61■□□□□ 0.89
VPS28-207ENST00000526977 CST5P28325 142 aaPredicted RBP20.61■□□□□ 0.89
VPS28-207ENST00000526977 HNRNPH3P31942 346 aaKnown RBP20.61■□□□□ 0.89
VPS28-207ENST00000526977 SNRPFP62306 86 aaKnown RBP20.61■□□□□ 0.89
VPS28-207ENST00000526977 LRRC71Q8N4P6 559 aa20.61■□□□□ 0.89
VPS28-207ENST00000526977 KLHDC9Q8NEP7 349 aa20.61■□□□□ 0.89
VPS28-207ENST00000526977 DEPTORQ8TB45 409 aa20.61■□□□□ 0.89
VPS28-207ENST00000526977 IRX2Q9BZI1 471 aaPredicted RBP20.61■□□□□ 0.89
VPS28-207ENST00000526977 IKZF4Q9H2S9 585 aa20.61■□□□□ 0.89
VPS28-207ENST00000526977 CGNQ9P2M7 1197 aaKnown RBP20.61■□□□□ 0.89
VPS28-207ENST00000526977 TBX20Q9UMR3 447 aa20.61■□□□□ 0.89
VPS28-207ENST00000526977 PTPN22Q9Y2R2 807 aa20.61■□□□□ 0.89
VPS28-207ENST00000526977 REXO2Q9Y3B8 237 aaKnown RBP20.61■□□□□ 0.89
VPS28-207ENST00000526977 DENND3A2RUS2 1198 aa20.6■□□□□ 0.89
VPS28-207ENST00000526977 RBM10P98175 930 aaKnown RBP20.6■□□□□ 0.89
VPS28-207ENST00000526977 CDK17Q00537 523 aa20.6■□□□□ 0.89
VPS28-207ENST00000526977 DRP2Q13474 957 aa20.6■□□□□ 0.89
VPS28-207ENST00000526977 NFIL3Q16649 462 aa20.6■□□□□ 0.89
VPS28-207ENST00000526977 KSR1Q8IVT5 923 aa20.6■□□□□ 0.89
VPS28-207ENST00000526977 PCSK9Q8NBP7 692 aaKnown RBP20.6■□□□□ 0.89
VPS28-207ENST00000526977 CLIC2O15247 247 aa20.6■□□□□ 0.89
VPS28-207ENST00000526977 AKAP3O75969 853 aa20.6■□□□□ 0.89
VPS28-207ENST00000526977 LAMTOR4Q0VGL1 99 aa20.6■□□□□ 0.89
VPS28-207ENST00000526977 KCNH2Q12809 1159 aa20.6■□□□□ 0.89
VPS28-207ENST00000526977 MARCH8Q5T0T0 291 aa20.6■□□□□ 0.89
VPS28-207ENST00000526977 RNF180Q86T96 592 aa20.6■□□□□ 0.89
VPS28-207ENST00000526977 LINC01465Q8N7H1 131 aa20.6■□□□□ 0.89
VPS28-207ENST00000526977 EDEM3Q9BZQ6 932 aa20.6■□□□□ 0.89
VPS28-207ENST00000526977 SETD4Q9NVD3 440 aa20.6■□□□□ 0.89
VPS28-207ENST00000526977 ARMCX3Q9UH62 379 aaPredicted RBP20.6■□□□□ 0.89
VPS28-207ENST00000526977 PLAGL2Q9UPG8 496 aa20.6■□□□□ 0.89
VPS28-207ENST00000526977 ZMYM2Q9UBW7 1377 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms