RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 GTF3C3Q9Y5Q9 886 aa16.03■□□□□ 0.16
CPSF1-201ENST00000526271 DDX11L8A8MPP1 907 aa16.02■□□□□ 0.16
CPSF1-201ENST00000526271 CA8P35219 290 aa16.02■□□□□ 0.16
CPSF1-201ENST00000526271 NLRP5P59047 1200 aa16.02■□□□□ 0.16
CPSF1-201ENST00000526271 FGD1P98174 961 aa16.02■□□□□ 0.16
CPSF1-201ENST00000526271 INF2Q27J81 1249 aa16.02■□□□□ 0.16
CPSF1-201ENST00000526271 BLIDQ8IZY5 108 aa16.02■□□□□ 0.16
CPSF1-201ENST00000526271 TMEM143Q96AN5 459 aa16.02■□□□□ 0.16
CPSF1-201ENST00000526271 XPNPEP1Q9NQW7 623 aa16.02■□□□□ 0.16
CPSF1-201ENST00000526271 CYP26B1Q9NR63 512 aa16.02■□□□□ 0.16
CPSF1-201ENST00000526271 BMP2KQ9NSY1 1161 aaPredicted RBP16.02■□□□□ 0.16
CPSF1-201ENST00000526271 DZANK1Q9NVP4 752 aa16.02■□□□□ 0.16
CPSF1-201ENST00000526271 TCEAL9Q9UHQ7 104 aa16.02■□□□□ 0.16
CPSF1-201ENST00000526271 KCNJ14Q9UNX9 436 aa16.02■□□□□ 0.16
CPSF1-201ENST00000526271 OTOGLQ3ZCN5 2332 aa16.01■□□□□ 0.15
CPSF1-201ENST00000526271 FAM205CA6NFA0 338 aa16.01■□□□□ 0.15
CPSF1-201ENST00000526271 NARSO43776 548 aaKnown RBP16.01■□□□□ 0.15
CPSF1-201ENST00000526271 SSBP05455 408 aaKnown RBP eCLIP16.01■□□□□ 0.15
CPSF1-201ENST00000526271 SFPQP23246 707 aaKnown RBP eCLIP16.01■□□□□ 0.15
CPSF1-201ENST00000526271 SPIRE1Q08AE8 756 aa16.01■□□□□ 0.15
CPSF1-201ENST00000526271 PPP2R5CQ13362 524 aa16.01■□□□□ 0.15
CPSF1-201ENST00000526271 ATAT1Q5SQI0 421 aa16.01■□□□□ 0.15
CPSF1-201ENST00000526271 ASTLQ6HA08 431 aaPredicted RBP16.01■□□□□ 0.15
CPSF1-201ENST00000526271 MOXD1Q6UVY6 613 aa16.01■□□□□ 0.15
CPSF1-201ENST00000526271 GLB1LQ6UWU2 654 aa16.01■□□□□ 0.15
CPSF1-201ENST00000526271 CATSPER4Q7RTX7 472 aa16.01■□□□□ 0.15
CPSF1-201ENST00000526271 TDRD5Q8NAT2 981 aaKnown RBP16.01■□□□□ 0.15
CPSF1-201ENST00000526271 OXER1Q8TDS5 423 aa16.01■□□□□ 0.15
CPSF1-201ENST00000526271 EIF2AQ9BY44 585 aaKnown RBP16.01■□□□□ 0.15
CPSF1-201ENST00000526271 ZSWIM6Q9HCJ5 1215 aa16.01■□□□□ 0.15
CPSF1-201ENST00000526271 DBR1Q9UK59 544 aaKnown RBP16.01■□□□□ 0.15
CPSF1-201ENST00000526271 COL4A3BPQ9Y5P4 624 aa16.01■□□□□ 0.15
CPSF1-201ENST00000526271 FANCMQ8IYD8 2048 aa16.01■□□□□ 0.15
CPSF1-201ENST00000526271 CACNA1IQ9P0X4 2223 aa16■□□□□ 0.15
CPSF1-201ENST00000526271 GPR179Q6PRD1 2367 aa16■□□□□ 0.15
CPSF1-201ENST00000526271 NRP1O14786 923 aa16■□□□□ 0.15
CPSF1-201ENST00000526271 POMCP01189 267 aa16■□□□□ 0.15
CPSF1-201ENST00000526271 MYBP10242 640 aa16■□□□□ 0.15
CPSF1-201ENST00000526271 NUBP1P53384 320 aa16■□□□□ 0.15
CPSF1-201ENST00000526271 PSMC5P62195 406 aa16■□□□□ 0.15
CPSF1-201ENST00000526271 FRMD5Q7Z6J6 570 aa16■□□□□ 0.15
CPSF1-201ENST00000526271 GSTCDQ8NEC7 633 aa16■□□□□ 0.15
CPSF1-201ENST00000526271 PRPF31Q8WWY3 499 aaKnown RBP16■□□□□ 0.15
CPSF1-201ENST00000526271 RSAD2Q8WXG1 361 aa16■□□□□ 0.15
CPSF1-201ENST00000526271 KCNK12Q9HB15 430 aa16■□□□□ 0.15
CPSF1-201ENST00000526271 RGL1Q9NZL6 768 aa16■□□□□ 0.15
CPSF1-201ENST00000526271 NOTCH4Q99466 2003 aa16■□□□□ 0.15
CPSF1-201ENST00000526271 CEP250Q9BV73 2442 aa15.99■□□□□ 0.15
CPSF1-201ENST00000526271 INPPL1O15357 1258 aa15.99■□□□□ 0.15
CPSF1-201ENST00000526271 PAPLNO95428 1278 aa15.99■□□□□ 0.15
CPSF1-201ENST00000526271 AKAP17AQ02040 695 aaKnown RBP15.99■□□□□ 0.15
CPSF1-201ENST00000526271 DSC1Q08554 894 aa15.99■□□□□ 0.15
CPSF1-201ENST00000526271 KIAA0319Q5VV43 1072 aa15.99■□□□□ 0.15
CPSF1-201ENST00000526271 RUFY3Q7L099 469 aa15.99■□□□□ 0.15
CPSF1-201ENST00000526271 COLGALT2Q8IYK4 626 aa15.99■□□□□ 0.15
CPSF1-201ENST00000526271 ZNF707Q96C28 371 aaPredicted RBP15.99■□□□□ 0.15
CPSF1-201ENST00000526271 B3GALT6Q96L58 329 aa15.99■□□□□ 0.15
CPSF1-201ENST00000526271 SFXN1Q9H9B4 322 aa15.99■□□□□ 0.15
CPSF1-201ENST00000526271 RSAD1Q9HA92 442 aa15.99■□□□□ 0.15
CPSF1-201ENST00000526271 DDX25Q9UHL0 483 aaKnown RBP15.99■□□□□ 0.15
CPSF1-201ENST00000526271 HES2Q9Y543 173 aa15.99■□□□□ 0.15
CPSF1-201ENST00000526271 VWA8A3KMH1 1905 aa15.99■□□□□ 0.15
CPSF1-201ENST00000526271 KRBA1A5PL33 1030 aa15.98■□□□□ 0.15
CPSF1-201ENST00000526271 WNT7AO00755 349 aa15.98■□□□□ 0.15
CPSF1-201ENST00000526271 TEX28O15482 410 aa15.98■□□□□ 0.15
CPSF1-201ENST00000526271 RFPL2O75678 378 aa15.98■□□□□ 0.15
CPSF1-201ENST00000526271 SRGAP2CP0DJJ0 459 aa15.98■□□□□ 0.15
CPSF1-201ENST00000526271 NCLP19338 710 aaKnown RBP15.98■□□□□ 0.15
CPSF1-201ENST00000526271 QARSP47897 775 aaKnown RBP15.98■□□□□ 0.15
CPSF1-201ENST00000526271 RAB27AP51159 221 aa15.98■□□□□ 0.15
CPSF1-201ENST00000526271 CLCN5P51795 746 aa15.98■□□□□ 0.15
CPSF1-201ENST00000526271 LAMTOR4Q0VGL1 99 aa15.98■□□□□ 0.15
CPSF1-201ENST00000526271 AMHR2Q16671 573 aa15.98■□□□□ 0.15
CPSF1-201ENST00000526271 CABP7Q86V35 215 aa15.98■□□□□ 0.15
CPSF1-201ENST00000526271 MYADMQ96S97 322 aa15.98■□□□□ 0.15
CPSF1-201ENST00000526271 PHF20Q9BVI0 1012 aa15.98■□□□□ 0.15
CPSF1-201ENST00000526271 HERC2P3Q9BVR0 1158 aa15.98■□□□□ 0.15
CPSF1-201ENST00000526271 CACNG4Q9UBN1 327 aa15.98■□□□□ 0.15
CPSF1-201ENST00000526271 DUSP12Q9UNI6 340 aa15.98■□□□□ 0.15
CPSF1-201ENST00000526271 TSPAN1O60635 241 aa15.97■□□□□ 0.15
CPSF1-201ENST00000526271 DEXIO95424 95 aa15.97■□□□□ 0.15
CPSF1-201ENST00000526271 CTDNEP1O95476 244 aa15.97■□□□□ 0.15
CPSF1-201ENST00000526271 AOC1P19801 751 aa15.97■□□□□ 0.15
CPSF1-201ENST00000526271 DNM2P50570 870 aa15.97■□□□□ 0.15
CPSF1-201ENST00000526271 CDC42EP1Q00587 391 aa15.97■□□□□ 0.15
CPSF1-201ENST00000526271 RNASELQ05823 741 aaKnown RBP15.97■□□□□ 0.15
CPSF1-201ENST00000526271 SSRP1Q08945 709 aaKnown RBP15.97■□□□□ 0.15
CPSF1-201ENST00000526271 GIT2Q14161 759 aa15.97■□□□□ 0.15
CPSF1-201ENST00000526271 NONOQ15233 471 aaKnown RBP eCLIP15.97■□□□□ 0.15
CPSF1-201ENST00000526271 LETM2Q2VYF4 491 aa15.97■□□□□ 0.15
CPSF1-201ENST00000526271 FERMT3Q86UX7 667 aa15.97■□□□□ 0.15
CPSF1-201ENST00000526271 ST13P5Q8NFI4 369 aaPredicted RBP15.97■□□□□ 0.15
CPSF1-201ENST00000526271 CMASQ8NFW8 434 aaPredicted RBP15.97■□□□□ 0.15
CPSF1-201ENST00000526271 ZFP42Q96MM3 310 aa15.97■□□□□ 0.15
CPSF1-201ENST00000526271 RPS6KC1Q96S38 1066 aa15.97■□□□□ 0.15
CPSF1-201ENST00000526271 GAD1Q99259 594 aa15.97■□□□□ 0.15
CPSF1-201ENST00000526271 TMEM175Q9BSA9 504 aa15.97■□□□□ 0.15
CPSF1-201ENST00000526271 CXCL16Q9H2A7 254 aa15.97■□□□□ 0.15
CPSF1-201ENST00000526271 RXFP1Q9HBX9 757 aa15.97■□□□□ 0.15
CPSF1-201ENST00000526271 MAN1C1Q9NR34 630 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms