RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	FHL2	Q14192	279 aa		3.35	□□□□□ -1.87
CD44-216	ENST00000525293	PLEKHG4	Q58EX7	1191 aa		3.35	□□□□□ -1.87
CD44-216	ENST00000525293	FNDC7	Q5VTL7	733 aa		3.35	□□□□□ -1.87
CD44-216	ENST00000525293	MFSD5	Q6N075	450 aa		3.35	□□□□□ -1.87
CD44-216	ENST00000525293	ZNF662	Q6ZS27	426 aa		3.35	□□□□□ -1.87
CD44-216	ENST00000525293	UNC5B	Q8IZJ1	945 aa		3.35	□□□□□ -1.87
CD44-216	ENST00000525293	UBR7	Q8N806	425 aa		3.35	□□□□□ -1.87
CD44-216	ENST00000525293	MB21D1	Q8N884	522 aa		3.35	□□□□□ -1.87
CD44-216	ENST00000525293	OR5M3	Q8NGP4	307 aa		3.35	□□□□□ -1.87
CD44-216	ENST00000525293	SLC5A5	Q92911	643 aa		3.35	□□□□□ -1.87
CD44-216	ENST00000525293	FDXACB1	Q9BRP7	624 aa	Predicted RBP	3.35	□□□□□ -1.87
CD44-216	ENST00000525293	EPC1	Q9H2F5	836 aa		3.35	□□□□□ -1.87
CD44-216	ENST00000525293	MMRN2	Q9H8L6	949 aa		3.35	□□□□□ -1.87
CD44-216	ENST00000525293	SLC2A4RG	Q9NR83	387 aa		3.35	□□□□□ -1.87
CD44-216	ENST00000525293	TMPRSS11E	Q9UL52	423 aa		3.35	□□□□□ -1.87
CD44-216	ENST00000525293	MAPRE3	Q9UPY8	281 aa		3.35	□□□□□ -1.87
CD44-216	ENST00000525293	REXO2	Q9Y3B8	237 aa	Known RBP	3.35	□□□□□ -1.87
CD44-216	ENST00000525293	PPP2R3B	Q9Y5P8	575 aa		3.35	□□□□□ -1.87
CD44-216	ENST00000525293	NUMBL	Q9Y6R0	609 aa		3.35	□□□□□ -1.87
CD44-216	ENST00000525293	KLRG2	A4D1S0	409 aa	Predicted RBP	3.34	□□□□□ -1.87
CD44-216	ENST00000525293	HOXA3	O43365	443 aa	Predicted RBP	3.34	□□□□□ -1.87
CD44-216	ENST00000525293	KDM1A	O60341	852 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	NRP2	O60462	931 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	FAM20B	O75063	409 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	IPO13	O94829	963 aa	Known RBP	3.34	□□□□□ -1.87
CD44-216	ENST00000525293	SEC24D	O94855	1032 aa	Predicted RBP	3.34	□□□□□ -1.87
CD44-216	ENST00000525293	CFB	P00751	764 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	LPL	P06858	475 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	BPI	P17213	487 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	GNAT2	P19087	354 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	HK1	P19367	917 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	CASR	P41180	1078 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	ID4	P47928	161 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	GPR15	P49685	360 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	RABGGTB	P53611	331 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	NRG3	P56975	720 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	SLC25A3	Q00325	362 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	PPARA	Q07869	468 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	STRN3	Q13033	797 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	TRIM25	Q14258	630 aa	Known RBP	3.34	□□□□□ -1.87
CD44-216	ENST00000525293	FAM214A	Q32MH5	1076 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	CT83	Q5H943	113 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	CCDC62	Q6P9F0	684 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	GIMAP6	Q6P9H5	292 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	LMBR1L	Q6UX01	489 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	DDX46	Q7L014	1031 aa	Known RBP	3.34	□□□□□ -1.87
CD44-216	ENST00000525293	TAS1R1	Q7RTX1	841 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	RASSF3	Q86WH2	238 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	LYSMD2	Q8IV50	215 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	MDGA1	Q8NFP4	955 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	NEU4	Q8WWR8	484 aa	Predicted RBP	3.34	□□□□□ -1.87
CD44-216	ENST00000525293	ST8SIA2	Q92186	375 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	MNT	Q99583	582 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	TRIM8	Q9BZR9	551 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	ENKD1	Q9H0I2	346 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	PRDM12	Q9H4Q4	367 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	EVL	Q9UI08	416 aa	Predicted RBP	3.34	□□□□□ -1.87
CD44-216	ENST00000525293	PRSS50	Q9UI38	385 aa		3.34	□□□□□ -1.87
CD44-216	ENST00000525293	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	3.33	□□□□□ -1.88
CD44-216	ENST00000525293		A0A1W2PR48	441 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	GOLGA6L6	A8MZA4	724 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	NEMP1	O14524	444 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	NRP1	O14786	923 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	RPS6KA4	O75676	772 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	MAK	P20794	623 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	LGALS4	P56470	323 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	TGFB2	P61812	414 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	DUSP2	Q05923	314 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	KRTAP1-1	Q07627	177 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	TOB2	Q14106	344 aa	Predicted RBP	3.33	□□□□□ -1.88
CD44-216	ENST00000525293	PDCD1	Q15116	288 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	UBE3C	Q15386	1083 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	DHCR24	Q15392	516 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	CCDC178	Q5BJE1	867 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	TAF7L	Q5H9L4	462 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	PITRM1	Q5JRX3	1037 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	C1QL3	Q5VWW1	255 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	3.33	□□□□□ -1.88
CD44-216	ENST00000525293	STRA8	Q7Z7C7	330 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	RNF180	Q86T96	592 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	THNSL2	Q86YJ6	484 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	MSL3	Q8N5Y2	521 aa	Known RBP	3.33	□□□□□ -1.88
CD44-216	ENST00000525293	ZNF483	Q8TF39	744 aa	Predicted RBP	3.33	□□□□□ -1.88
CD44-216	ENST00000525293	CLIP3	Q96DZ5	547 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	PKNOX2	Q96KN3	472 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	TTC1	Q99614	292 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	CPPED1	Q9BRF8	314 aa	Predicted RBP	3.33	□□□□□ -1.88
CD44-216	ENST00000525293	IFT22	Q9H7X7	185 aa		3.33	□□□□□ -1.88
CD44-216	ENST00000525293	TOPORS	Q9NS56	1045 aa	Predicted RBP	3.33	□□□□□ -1.88
CD44-216	ENST00000525293	ZEB2	O60315	1214 aa		3.32	□□□□□ -1.88
CD44-216	ENST00000525293	ADH4	P08319	380 aa		3.32	□□□□□ -1.88
CD44-216	ENST00000525293	LTA4H	P09960	611 aa	Known RBP	3.32	□□□□□ -1.88
CD44-216	ENST00000525293	HSD3B2	P26439	372 aa		3.32	□□□□□ -1.88
CD44-216	ENST00000525293	MRPL49	Q13405	166 aa	Known RBP	3.32	□□□□□ -1.88
CD44-216	ENST00000525293	UGT8	Q16880	541 aa		3.32	□□□□□ -1.88
CD44-216	ENST00000525293	RABL3	Q5HYI8	236 aa		3.32	□□□□□ -1.88
CD44-216	ENST00000525293	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	3.32	□□□□□ -1.88
CD44-216	ENST00000525293	SLC41A1	Q8IVJ1	513 aa		3.32	□□□□□ -1.88
CD44-216	ENST00000525293	GLB1L2	Q8IW92	636 aa		3.32	□□□□□ -1.88
CD44-216	ENST00000525293	CLRN3	Q8NCR9	226 aa		3.32	□□□□□ -1.88

Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms