RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 ERVK-5Q9HDB9 667 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 SLC39A2Q9NP94 309 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 RMND1Q9NWS8 449 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 LARSQ9P2J5 1176 aaKnown RBP16.87■□□□□ 0.29
LSM1-203ENST00000520755 ARHGAP28Q9P2N2 729 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 ZMYM2Q9UBW7 1377 aa16.87■□□□□ 0.29
LSM1-203ENST00000520755 ANK1P16157 1881 aa16.86■□□□□ 0.29
LSM1-203ENST00000520755 INO80B-WBP1J3KQ70 363 aa16.86■□□□□ 0.29
LSM1-203ENST00000520755 K7ENM7 598 aa16.86■□□□□ 0.29
LSM1-203ENST00000520755 GPR182O15218 404 aa16.86■□□□□ 0.29
LSM1-203ENST00000520755 SLC16A4O15374 487 aa16.86■□□□□ 0.29
LSM1-203ENST00000520755 EDN1P05305 212 aa16.86■□□□□ 0.29
LSM1-203ENST00000520755 CD44P16070 742 aaKnown RBP16.86■□□□□ 0.29
LSM1-203ENST00000520755 SFPQP23246 707 aaKnown RBP eCLIP16.86■□□□□ 0.29
LSM1-203ENST00000520755 IKBKEQ14164 716 aa16.86■□□□□ 0.29
LSM1-203ENST00000520755 DPCR1Q3MIW9 517 aa16.86■□□□□ 0.29
LSM1-203ENST00000520755 ZNF658Q5TYW1 1059 aaPredicted RBP16.86■□□□□ 0.29
LSM1-203ENST00000520755 CATSPER4Q7RTX7 472 aa16.86■□□□□ 0.29
LSM1-203ENST00000520755 SRGAP1Q7Z6B7 1085 aa16.86■□□□□ 0.29
LSM1-203ENST00000520755 FAM178BQ8IXR5 827 aa16.86■□□□□ 0.29
LSM1-203ENST00000520755 TRIML1Q8N9V2 468 aa16.86■□□□□ 0.29
LSM1-203ENST00000520755 TMEM161BQ8NDZ6 487 aa16.86■□□□□ 0.29
LSM1-203ENST00000520755 RNPC3Q96LT9 517 aaKnown RBP16.86■□□□□ 0.29
LSM1-203ENST00000520755 NTPCRQ9BSD7 190 aaKnown RBP16.86■□□□□ 0.29
LSM1-203ENST00000520755 KMT5AQ9NQR1 393 aa16.86■□□□□ 0.29
LSM1-203ENST00000520755 MAPTP10636 758 aaKnown RBP16.85■□□□□ 0.29
LSM1-203ENST00000520755 HOXD13P35453 343 aa16.85■□□□□ 0.29
LSM1-203ENST00000520755 MBTD1Q05BQ5 628 aa16.85■□□□□ 0.29
LSM1-203ENST00000520755 POU5F1BQ06416 359 aa16.85■□□□□ 0.29
LSM1-203ENST00000520755 TYRO3Q06418 890 aa16.85■□□□□ 0.29
LSM1-203ENST00000520755 ZC2HC1CQ53FD0 456 aaPredicted RBP16.85■□□□□ 0.29
LSM1-203ENST00000520755 IFNLR1Q8IU57 520 aaPredicted RBP16.85■□□□□ 0.29
LSM1-203ENST00000520755 HERVK_113Q902F9 699 aa16.85■□□□□ 0.29
LSM1-203ENST00000520755 KCNN1Q92952 543 aa16.85■□□□□ 0.29
LSM1-203ENST00000520755 NFKBIZQ9BYH8 718 aa16.85■□□□□ 0.29
LSM1-203ENST00000520755 CCDC113Q9H0I3 377 aa16.85■□□□□ 0.29
LSM1-203ENST00000520755 C2orf40Q9H1Z8 148 aa16.85■□□□□ 0.29
LSM1-203ENST00000520755 MTIF3Q9H2K0 278 aaKnown RBP16.85■□□□□ 0.29
LSM1-203ENST00000520755 PRO3102Q9H379 93 aa16.85■□□□□ 0.29
LSM1-203ENST00000520755 TMX1Q9H3N1 280 aa16.85■□□□□ 0.29
LSM1-203ENST00000520755 ST6GALNAC4Q9H4F1 302 aa16.85■□□□□ 0.29
LSM1-203ENST00000520755 MRPL44Q9H9J2 332 aaKnown RBP16.85■□□□□ 0.29
LSM1-203ENST00000520755 CXXC1Q9P0U4 656 aaPredicted RBP16.85■□□□□ 0.29
LSM1-203ENST00000520755 COLQQ9Y215 455 aaPredicted RBP16.85■□□□□ 0.29
LSM1-203ENST00000520755 RALGAPA2Q2PPJ7 1873 aa16.84■□□□□ 0.29
LSM1-203ENST00000520755 GBF1Q92538 1859 aa16.84■□□□□ 0.29
LSM1-203ENST00000520755 ABHD14A-ACY1A0A1B0GW23 586 aa16.84■□□□□ 0.29
LSM1-203ENST00000520755 BAIAP3O94812 1187 aa16.84■□□□□ 0.29
LSM1-203ENST00000520755 ERLIN2O94905 339 aa16.84■□□□□ 0.29
LSM1-203ENST00000520755 NLRP12P59046 1061 aa16.84■□□□□ 0.29
LSM1-203ENST00000520755 KCNA1Q09470 495 aa16.84■□□□□ 0.29
LSM1-203ENST00000520755 PSMD2Q13200 908 aa16.84■□□□□ 0.29
LSM1-203ENST00000520755 C11orf57Q6ZUT1 292 aaPredicted RBP16.84■□□□□ 0.29
LSM1-203ENST00000520755 ZNF720Q7Z2F6 126 aa16.84■□□□□ 0.29
LSM1-203ENST00000520755 HAUS6Q7Z4H7 955 aa16.84■□□□□ 0.29
LSM1-203ENST00000520755 TDHQ8IZJ6 230 aa16.84■□□□□ 0.29
LSM1-203ENST00000520755 SCFD1Q8WVM8 642 aa16.84■□□□□ 0.29
LSM1-203ENST00000520755 CCDC47Q96A33 483 aaKnown RBP16.84■□□□□ 0.29
LSM1-203ENST00000520755 FTHL17Q9BXU8 183 aa16.84■□□□□ 0.29
LSM1-203ENST00000520755 IKZF4Q9H2S9 585 aa16.84■□□□□ 0.29
LSM1-203ENST00000520755 PHLPP2Q6ZVD8 1323 aa16.84■□□□□ 0.29
LSM1-203ENST00000520755 PDCD11Q14690 1871 aaKnown RBP16.84■□□□□ 0.29
LSM1-203ENST00000520755 DENND3A2RUS2 1198 aa16.83■□□□□ 0.28
LSM1-203ENST00000520755 PPP1R3GB7ZBB8 358 aa16.83■□□□□ 0.28
LSM1-203ENST00000520755 MGEA5O60502 916 aa16.83■□□□□ 0.28
LSM1-203ENST00000520755 PRPF6O94906 941 aaKnown RBP16.83■□□□□ 0.28
LSM1-203ENST00000520755 LETM1O95202 739 aaPredicted RBP16.83■□□□□ 0.28
LSM1-203ENST00000520755 GCNT3O95395 438 aa16.83■□□□□ 0.28
LSM1-203ENST00000520755 IBSPP21815 317 aaPredicted RBP16.83■□□□□ 0.28
LSM1-203ENST00000520755 PRCPP42785 496 aa16.83■□□□□ 0.28
LSM1-203ENST00000520755 KCNJ6P48051 423 aa16.83■□□□□ 0.28
LSM1-203ENST00000520755 SMTNP53814 917 aa16.83■□□□□ 0.28
LSM1-203ENST00000520755 WDR5P61964 334 aaKnown RBP16.83■□□□□ 0.28
LSM1-203ENST00000520755 GTF2BQ00403 316 aa16.83■□□□□ 0.28
LSM1-203ENST00000520755 BMT2Q1RMZ1 405 aa16.83■□□□□ 0.28
LSM1-203ENST00000520755 COBLL1Q53SF7 1204 aa16.83■□□□□ 0.28
LSM1-203ENST00000520755 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.83■□□□□ 0.285e-7■□□□□ 9.5
LSM1-203ENST00000520755 LINC01599Q8WXQ3 324 aa16.83■□□□□ 0.28
LSM1-203ENST00000520755 ADAM2Q99965 735 aa16.83■□□□□ 0.28
LSM1-203ENST00000520755 MAPK8IP1Q9UQF2 711 aa16.83■□□□□ 0.28
LSM1-203ENST00000520755 PIN4Q9Y237 131 aaKnown RBP16.83■□□□□ 0.28
LSM1-203ENST00000520755 SLC4A7Q9Y6M7 1214 aa16.83■□□□□ 0.28
LSM1-203ENST00000520755 UBE4BO95155 1302 aa16.82■□□□□ 0.28
LSM1-203ENST00000520755 EIF3DO15371 548 aaKnown RBP eCLIP16.82■□□□□ 0.28
LSM1-203ENST00000520755 TSPAN1O60635 241 aa16.82■□□□□ 0.28
LSM1-203ENST00000520755 EFCAB14O75071 495 aa16.82■□□□□ 0.28
LSM1-203ENST00000520755 PRKCBP05771 671 aa16.82■□□□□ 0.28
LSM1-203ENST00000520755 ZSCAN20P17040 1043 aaPredicted RBP16.82■□□□□ 0.28
LSM1-203ENST00000520755 EFNA5P52803 228 aa16.82■□□□□ 0.28
LSM1-203ENST00000520755 ZNF445P59923 1031 aa16.82■□□□□ 0.28
LSM1-203ENST00000520755 STX1AQ16623 288 aa16.82■□□□□ 0.28
LSM1-203ENST00000520755 MAPK6Q16659 721 aa16.82■□□□□ 0.28
LSM1-203ENST00000520755 SASS6Q6UVJ0 657 aa16.82■□□□□ 0.28
LSM1-203ENST00000520755 ADSSL1Q8N142 457 aa16.82■□□□□ 0.28
LSM1-203ENST00000520755 AGPAT5Q9NUQ2 364 aa16.82■□□□□ 0.28
LSM1-203ENST00000520755 PRMT7Q9NVM4 692 aaPredicted RBP16.82■□□□□ 0.28
LSM1-203ENST00000520755 KCNG1Q9UIX4 513 aa16.82■□□□□ 0.28
LSM1-203ENST00000520755 TRIP11Q15643 1979 aa16.82■□□□□ 0.28
LSM1-203ENST00000520755 CITO14578 2027 aa16.81■□□□□ 0.28
LSM1-203ENST00000520755 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms