RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 RSAD1Q9HA92 442 aa19.45■□□□□ 0.7
DDX41-217ENST00000515562 TUFT1Q9NNX1 390 aa19.45■□□□□ 0.7
DDX41-217ENST00000515562 USP15Q9Y4E8 981 aaPredicted RBP19.45■□□□□ 0.7
DDX41-217ENST00000515562 INO80B-WBP1J3KQ70 363 aa19.44■□□□□ 0.7
DDX41-217ENST00000515562 OR52Z1P0C646 297 aa19.44■□□□□ 0.7
DDX41-217ENST00000515562 CAPSQ13938 189 aa19.44■□□□□ 0.7
DDX41-217ENST00000515562 KCNC3Q14003 757 aa19.44■□□□□ 0.7
DDX41-217ENST00000515562 UBXN11Q5T124 520 aa19.44■□□□□ 0.7
DDX41-217ENST00000515562 MRPL43Q8N983 215 aaKnown RBP19.44■□□□□ 0.7
DDX41-217ENST00000515562 ERMNQ8TAM6 284 aa19.44■□□□□ 0.7
DDX41-217ENST00000515562 KIF2CQ99661 725 aa19.44■□□□□ 0.7
DDX41-217ENST00000515562 UBN1Q9NPG3 1134 aa19.44■□□□□ 0.7
DDX41-217ENST00000515562 KANSL3Q9P2N6 904 aa19.44■□□□□ 0.7
DDX41-217ENST00000515562 STK39Q9UEW8 545 aa19.44■□□□□ 0.7
DDX41-217ENST00000515562 HCN4Q9Y3Q4 1203 aa19.44■□□□□ 0.7
DDX41-217ENST00000515562 FAM86C2PA6NEL3 165 aa19.43■□□□□ 0.7
DDX41-217ENST00000515562 C2orf71A6NGG8 1288 aa19.43■□□□□ 0.7
DDX41-217ENST00000515562 PRR33A8MZF0 331 aa19.43■□□□□ 0.7
DDX41-217ENST00000515562 NT5C1B-RDH14C9J2C7 533 aa19.43■□□□□ 0.7
DDX41-217ENST00000515562 TSPAN1O60635 241 aa19.43■□□□□ 0.7
DDX41-217ENST00000515562 NCLP19338 710 aaKnown RBP19.43■□□□□ 0.7
DDX41-217ENST00000515562 ARL2P36404 184 aa19.43■□□□□ 0.7
DDX41-217ENST00000515562 TRAPPC10P48553 1259 aa19.43■□□□□ 0.7
DDX41-217ENST00000515562 RBM10P98175 930 aaKnown RBP19.43■□□□□ 0.7
DDX41-217ENST00000515562 AGMOQ6ZNB7 445 aa19.43■□□□□ 0.7
DDX41-217ENST00000515562 NOSTRINQ8IVI9 506 aa19.43■□□□□ 0.7
DDX41-217ENST00000515562 MCPH1Q8NEM0 835 aa19.43■□□□□ 0.7
DDX41-217ENST00000515562 ASAP3Q8TDY4 903 aa19.43■□□□□ 0.7
DDX41-217ENST00000515562 PIGOQ8TEQ8 1089 aa19.43■□□□□ 0.7
DDX41-217ENST00000515562 CASP10Q92851 521 aa19.43■□□□□ 0.7
DDX41-217ENST00000515562 IGSF21Q96ID5 467 aa19.43■□□□□ 0.7
DDX41-217ENST00000515562 POLR3CQ9BUI4 534 aaPredicted RBP19.43■□□□□ 0.7
DDX41-217ENST00000515562 NRDE2Q9H7Z3 1164 aa19.43■□□□□ 0.7
DDX41-217ENST00000515562 NOL7Q9UMY1 257 aaKnown RBP19.43■□□□□ 0.7
DDX41-217ENST00000515562 C5orf42Q9H799 3197 aa19.42■□□□□ 0.7
DDX41-217ENST00000515562 USO1O60763 962 aaKnown RBP19.42■□□□□ 0.7
DDX41-217ENST00000515562 GALTP07902 379 aa19.42■□□□□ 0.7
DDX41-217ENST00000515562 SPATA31C1P0DKV0 1188 aa19.42■□□□□ 0.7
DDX41-217ENST00000515562 HOXB8P17481 243 aaPredicted RBP19.42■□□□□ 0.7
DDX41-217ENST00000515562 TECP42680 631 aa19.42■□□□□ 0.7
DDX41-217ENST00000515562 MBTD1Q05BQ5 628 aa19.42■□□□□ 0.7
DDX41-217ENST00000515562 GIT2Q14161 759 aa19.42■□□□□ 0.7
DDX41-217ENST00000515562 TTC38Q5R3I4 469 aa19.42■□□□□ 0.7
DDX41-217ENST00000515562 HAUS3Q68CZ6 603 aa19.42■□□□□ 0.7
DDX41-217ENST00000515562 ANKRD54Q6NXT1 300 aa19.42■□□□□ 0.7
DDX41-217ENST00000515562 LLGL2Q6P1M3 1020 aa19.42■□□□□ 0.7
DDX41-217ENST00000515562 DDX53Q86TM3 631 aaKnown RBP19.42■□□□□ 0.7
DDX41-217ENST00000515562 TMEM173Q86WV6 379 aaPredicted RBP19.42■□□□□ 0.7
DDX41-217ENST00000515562 CATSPER3Q86XQ3 398 aa19.42■□□□□ 0.7
DDX41-217ENST00000515562 VPS52Q8N1B4 723 aa19.42■□□□□ 0.7
DDX41-217ENST00000515562 SUSD6Q92537 303 aa19.42■□□□□ 0.7
DDX41-217ENST00000515562 PHF7Q9BWX1 381 aaPredicted RBP19.42■□□□□ 0.7
DDX41-217ENST00000515562 GBP3Q9H0R5 595 aa19.42■□□□□ 0.7
DDX41-217ENST00000515562 ZBP1Q9H171 429 aa19.42■□□□□ 0.7
DDX41-217ENST00000515562 POLR3FQ9H1D9 316 aaPredicted RBP19.42■□□□□ 0.7
DDX41-217ENST00000515562 RAPGEFL1Q9UHV5 662 aa19.42■□□□□ 0.7
DDX41-217ENST00000515562 DBR1Q9UK59 544 aaKnown RBP19.42■□□□□ 0.7
DDX41-217ENST00000515562 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.41■□□□□ 0.7
DDX41-217ENST00000515562 GLRA2P23416 452 aa19.41■□□□□ 0.7
DDX41-217ENST00000515562 CA8P35219 290 aa19.41■□□□□ 0.7
DDX41-217ENST00000515562 RABEP1Q15276 862 aa19.41■□□□□ 0.7
DDX41-217ENST00000515562 ZNF174Q15697 407 aa19.41■□□□□ 0.7
DDX41-217ENST00000515562 HERC4Q5GLZ8 1057 aaPredicted RBP19.41■□□□□ 0.7
DDX41-217ENST00000515562 HACE1Q8IYU2 909 aa19.41■□□□□ 0.7
DDX41-217ENST00000515562 FAM193BQ96PV7 902 aaPredicted RBP19.41■□□□□ 0.7
DDX41-217ENST00000515562 NACC1Q96RE7 527 aa19.41■□□□□ 0.7
DDX41-217ENST00000515562 DNAJB4Q9UDY4 337 aa19.41■□□□□ 0.7
DDX41-217ENST00000515562 IPPQ9Y573 584 aa19.41■□□□□ 0.7
DDX41-217ENST00000515562 IRAK3Q9Y616 596 aa19.41■□□□□ 0.7
DDX41-217ENST00000515562 LOC730098B7Z3J9 87 aa19.4■□□□□ 0.7
DDX41-217ENST00000515562 MED24O75448 989 aa19.4■□□□□ 0.7
DDX41-217ENST00000515562 CTSAP10619 480 aa19.4■□□□□ 0.7
DDX41-217ENST00000515562 ITGA4P13612 1032 aa19.4■□□□□ 0.7
DDX41-217ENST00000515562 MUTP22033 750 aa19.4■□□□□ 0.7
DDX41-217ENST00000515562 RPA1P27694 616 aa19.4■□□□□ 0.7
DDX41-217ENST00000515562 SLC11A1P49279 550 aa19.4■□□□□ 0.7
DDX41-217ENST00000515562 CBX2Q14781 532 aaPredicted RBP19.4■□□□□ 0.7
DDX41-217ENST00000515562 TPRNQ4KMQ1 711 aa19.4■□□□□ 0.7
DDX41-217ENST00000515562 POTEGQ6S5H5 508 aa19.4■□□□□ 0.7
DDX41-217ENST00000515562 ZNF280BQ86YH2 543 aa19.4■□□□□ 0.7
DDX41-217ENST00000515562 RNF135Q8IUD6 432 aa19.4■□□□□ 0.7
DDX41-217ENST00000515562 TMEM87AQ8NBN3 555 aa19.4■□□□□ 0.7
DDX41-217ENST00000515562 SMG8Q8ND04 991 aaKnown RBP19.4■□□□□ 0.7
DDX41-217ENST00000515562 TMEM175Q9BSA9 504 aa19.4■□□□□ 0.7
DDX41-217ENST00000515562 TRIM6Q9C030 488 aaPredicted RBP19.4■□□□□ 0.7
DDX41-217ENST00000515562 CSRNP2Q9H175 543 aa19.4■□□□□ 0.7
DDX41-217ENST00000515562 KIF3AQ9Y496 699 aa19.4■□□□□ 0.7
DDX41-217ENST00000515562 ARIH1Q9Y4X5 557 aaPredicted RBP19.4■□□□□ 0.7
DDX41-217ENST00000515562 HCFC2Q9Y5Z7 792 aa19.4■□□□□ 0.7
DDX41-217ENST00000515562 INPPL1O15357 1258 aa19.39■□□□□ 0.69
DDX41-217ENST00000515562 ST18O60284 1047 aa19.39■□□□□ 0.69
DDX41-217ENST00000515562 CLASP2O75122 1294 aaKnown RBP19.39■□□□□ 0.69
DDX41-217ENST00000515562 CXCL14O95715 111 aa19.39■□□□□ 0.69
DDX41-217ENST00000515562 ARF4P18085 180 aaPredicted RBP19.39■□□□□ 0.69
DDX41-217ENST00000515562 AMHR2Q16671 573 aa19.39■□□□□ 0.69
DDX41-217ENST00000515562 SYCE2Q6PIF2 218 aa19.39■□□□□ 0.69
DDX41-217ENST00000515562 BCL7CQ8WUZ0 217 aaPredicted RBP19.39■□□□□ 0.69
DDX41-217ENST00000515562 CPB2Q96IY4 423 aa19.39■□□□□ 0.69
DDX41-217ENST00000515562 EIF2AQ9BY44 585 aaKnown RBP19.39■□□□□ 0.69
DDX41-217ENST00000515562 S1PR5Q9H228 398 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms