RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.47■□□□□ 0.399e-6■□□□□ 11.3
NUP54-214ENST00000514307 PLXNA1Q9UIW2 1896 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 ESPNB1AK53 854 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 ANKRD63C9JTQ0 380 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 MSCO60682 206 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 SMIM10L2AP0DMW4 78 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 SMIM10L2BP0DMW5 78 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 SKILP12757 684 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 PRKAR2AP13861 404 aaKnown RBP17.46■□□□□ 0.39
NUP54-214ENST00000514307 TRIM21P19474 475 aaKnown RBP17.46■□□□□ 0.39
NUP54-214ENST00000514307 CASP4P49662 377 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 PTENP60484 403 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 NCBP1Q09161 790 aaKnown RBP17.46■□□□□ 0.39
NUP54-214ENST00000514307 CDCA2Q69YH5 1023 aaPredicted RBP17.46■□□□□ 0.39
NUP54-214ENST00000514307 NFRKBQ6P4R8 1299 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 RDH13Q8NBN7 331 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 PCSK9Q8NBP7 692 aaKnown RBP17.46■□□□□ 0.39
NUP54-214ENST00000514307 SLAIN1Q8ND83 568 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 NEK11Q8NG66 645 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 KAT2BQ92831 832 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 ZNF830Q96NB3 372 aaPredicted RBP17.46■□□□□ 0.39
NUP54-214ENST00000514307 TCHPQ9BT92 498 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 MMRN2Q9H8L6 949 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 SETD4Q9NVD3 440 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 ZNHIT6Q9NWK9 470 aaKnown RBP17.46■□□□□ 0.39
NUP54-214ENST00000514307 CAPN11Q9UMQ6 739 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 AKT3Q9Y243 479 aa17.46■□□□□ 0.39
NUP54-214ENST00000514307 LRRC37A2A6NM11 1700 aa17.45■□□□□ 0.38
NUP54-214ENST00000514307 SMIM35A0A1B0GVV1 85 aa17.45■□□□□ 0.38
NUP54-214ENST00000514307 A0A1W2PQJ5 194 aa17.45■□□□□ 0.38
NUP54-214ENST00000514307 GTPBP10A4D1E9 387 aaKnown RBP17.45■□□□□ 0.38
NUP54-214ENST00000514307 ZNF233A6NK53 670 aa17.45■□□□□ 0.38
NUP54-214ENST00000514307 ACKR2O00590 384 aa17.45■□□□□ 0.38
NUP54-214ENST00000514307 N4BP1O75113 896 aaKnown RBP17.45■□□□□ 0.38
NUP54-214ENST00000514307 RPLP2P05387 115 aaKnown RBP17.45■□□□□ 0.38
NUP54-214ENST00000514307 MATR3P43243 847 aaKnown RBP eCLIP17.45■□□□□ 0.381e-9■■■■□ 19.8
NUP54-214ENST00000514307 CLCN3P51790 818 aa17.45■□□□□ 0.38
NUP54-214ENST00000514307 MCCD1P59942 119 aaPredicted RBP17.45■□□□□ 0.38
NUP54-214ENST00000514307 PURAQ00577 322 aaKnown RBP17.45■□□□□ 0.38
NUP54-214ENST00000514307 BEX3Q00994 111 aa17.45■□□□□ 0.38
NUP54-214ENST00000514307 GBP6Q6ZN66 633 aa17.45■□□□□ 0.38
NUP54-214ENST00000514307 ZNF410Q86VK4 478 aa17.45■□□□□ 0.38
NUP54-214ENST00000514307 IFNLR1Q8IU57 520 aaPredicted RBP17.45■□□□□ 0.38
NUP54-214ENST00000514307 GPD1LQ8N335 351 aa17.45■□□□□ 0.38
NUP54-214ENST00000514307 LINC01465Q8N7H1 131 aa17.45■□□□□ 0.38
NUP54-214ENST00000514307 OR8K1Q8NGG5 319 aa17.45■□□□□ 0.38
NUP54-214ENST00000514307 TMC2Q8TDI7 906 aa17.45■□□□□ 0.38
NUP54-214ENST00000514307 ZNF296Q8WUU4 475 aaPredicted RBP17.45■□□□□ 0.38
NUP54-214ENST00000514307 CBWD1Q9BRT8 395 aa17.45■□□□□ 0.38
NUP54-214ENST00000514307 NAA15Q9BXJ9 866 aaKnown RBP17.45■□□□□ 0.38
NUP54-214ENST00000514307 INO80BQ9C086 356 aaPredicted RBP17.45■□□□□ 0.38
NUP54-214ENST00000514307 NUCKS1Q9H1E3 243 aaKnown RBP17.45■□□□□ 0.38
NUP54-214ENST00000514307 FZD8Q9H461 694 aa17.45■□□□□ 0.38
NUP54-214ENST00000514307 XPNPEP3Q9NQH7 507 aa17.45■□□□□ 0.38
NUP54-214ENST00000514307 PRMT7Q9NVM4 692 aaPredicted RBP17.45■□□□□ 0.38
NUP54-214ENST00000514307 ADGRA3Q8IWK6 1321 aa17.45■□□□□ 0.38
NUP54-214ENST00000514307 C17orf102A2RUQ5 167 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 INO80B-WBP1J3KQ70 363 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 P4HA2O15460 535 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 CLDN3O15551 220 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 EXTL3O43909 919 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 TOM1L1O75674 476 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 CABYRO75952 493 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 PRKCBP05771 671 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 ELNP15502 786 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 CASP14P31944 242 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 VAMP7P51809 220 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 DRP2Q13474 957 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 PCBP1Q15365 356 aaKnown RBP eCLIP17.44■□□□□ 0.38
NUP54-214ENST00000514307 TMEM132AQ24JP5 1023 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 DCAF17Q5H9S7 520 aaPredicted RBP17.44■□□□□ 0.38
NUP54-214ENST00000514307 MARCH8Q5T0T0 291 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 TAS1R3Q7RTX0 852 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 SRGAP1Q7Z6B7 1085 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 RNF180Q86T96 592 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 KIAA0319LQ8IZA0 1049 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 FBXL18Q96ME1 805 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 NLRP4Q96MN2 994 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 IKZF4Q9H2S9 585 aa17.44■□□□□ 0.38
NUP54-214ENST00000514307 AGO2Q9UKV8 859 aaKnown RBP17.44■□□□□ 0.38
NUP54-214ENST00000514307 MBLAC1A4D2B0 266 aaPredicted RBP17.43■□□□□ 0.38
NUP54-214ENST00000514307 CYP2C9P11712 490 aa17.43■□□□□ 0.38
NUP54-214ENST00000514307 ADSSP30520 456 aa17.43■□□□□ 0.38
NUP54-214ENST00000514307 GTF2H1P32780 548 aa17.43■□□□□ 0.38
NUP54-214ENST00000514307 KRT9P35527 623 aa17.43■□□□□ 0.38
NUP54-214ENST00000514307 ADKP55263 362 aaKnown RBP17.43■□□□□ 0.38
NUP54-214ENST00000514307 ZBED6P86452 979 aa17.43■□□□□ 0.38
NUP54-214ENST00000514307 BFSP1Q12934 665 aa17.43■□□□□ 0.38
NUP54-214ENST00000514307 PRPF4BQ13523 1007 aaKnown RBP17.43■□□□□ 0.38
NUP54-214ENST00000514307 SNRNP35Q16560 246 aaKnown RBP17.43■□□□□ 0.38
NUP54-214ENST00000514307 FAM187BQ17R55 369 aa17.43■□□□□ 0.38
NUP54-214ENST00000514307 EXOC3L4Q17RC7 722 aa17.43■□□□□ 0.38
NUP54-214ENST00000514307 MAP3K21Q5TCX8 1036 aa17.43■□□□□ 0.38
NUP54-214ENST00000514307 APBB1IPQ7Z5R6 666 aaPredicted RBP17.43■□□□□ 0.38
NUP54-214ENST00000514307 LMBR1Q8WVP7 490 aa17.43■□□□□ 0.38
NUP54-214ENST00000514307 NLRP7Q8WX94 980 aa17.43■□□□□ 0.38
NUP54-214ENST00000514307 SLC35C1Q96A29 364 aa17.43■□□□□ 0.38
NUP54-214ENST00000514307 PRIMPOLQ96LW4 560 aa17.43■□□□□ 0.38
NUP54-214ENST00000514307 MFSD14AQ96MC6 490 aa17.43■□□□□ 0.38
NUP54-214ENST00000514307 SCLT1Q96NL6 688 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms