RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 TMC3Q7Z5M5 1100 aa17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ATP8B4Q8TF62 1192 aa17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 CTNNBL1Q8WYA6 563 aaPredicted RBP17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 PAGR1Q9BTK6 254 aa17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 THAP2Q9H0W7 228 aa17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 FAM170AA1A519 330 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 HIP1RO75146 1068 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 MYZAPP0CAP1 466 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 TNFAIP3P21580 790 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 SEC24CP53992 1094 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 TRAF1Q13077 416 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ARHGAP44Q17R89 818 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 STXBP4Q6ZWJ1 553 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ARHGEF10LQ9HCE6 1279 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ADM5C9JUS6 153 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 LIG3P49916 1009 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 DLG4P78352 724 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 SPDYE2Q495Y8 402 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 B4GALNT4Q76KP1 1039 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 MICALL1Q8N3F8 863 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ZNF473Q8WTR7 871 aaKnown RBP17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 HOOK2Q96ED9 719 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 LXNQ9BS40 222 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 TRIM51Q9BSJ1 452 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 WDR11Q9BZH6 1224 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 HERC5Q9UII4 1024 aaKnown RBP17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 DIS3Q9Y2L1 958 aaKnown RBP17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ATXN2Q99700 1313 aaKnown RBP17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 CNTNAP1P78357 1384 aa17.4■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ANKRD62A6NC57 917 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 GOLGA6L10A6NI86 522 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 SRRM3A6NNA2 597 aaPredicted RBP17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 KIF1CO43896 1103 aaKnown RBP17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 EXOC3O60645 756 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 LRRN2O75325 713 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 PTENP60484 403 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 NLRP14Q86W24 1093 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 RDH13Q8NBN7 331 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 MYCBPAPQ8TBZ2 947 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 UBLCP1Q8WVY7 318 aaPredicted RBP17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ZBED3Q96IU2 234 aaPredicted RBP17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 CCT8L2Q96SF2 557 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 AGPAT1Q99943 283 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 TEKT3Q9BXF9 490 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 TXLNGYQ9BZA5 131 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 CARD9Q9H257 536 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 DPH5Q9H2P9 285 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 LRRC4CQ9HCJ2 640 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ERVK-5Q9HDB9 667 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 FAM114A2Q9NRY5 505 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 DONSONQ9NYP3 566 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 SLC12A6Q9UHW9 1150 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 CLEC11AQ9Y240 323 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 DAAM1Q9Y4D1 1078 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 HPDP32754 393 aaPredicted RBP17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 MTMR3Q13615 1198 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 RASA3Q14644 834 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 SLC20A1Q8WUM9 679 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ALG3Q92685 438 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 CENPHQ9H3R5 247 aa17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 MRPL11Q9Y3B7 192 aaKnown RBP17.39■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ARHGEF35A5YM69 484 aa17.38■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 TISP43B9A030 160 aa17.38■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 COPB2P35606 906 aa17.38■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 BIRC3Q13489 604 aa17.38■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 MYBPC2Q14324 1141 aa17.38■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 AGBL2Q5U5Z8 902 aa17.38■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 MAP1SQ66K74 1059 aaPredicted RBP17.38■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ARHGEF19Q8IW93 802 aa17.38■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 KAT2BQ92831 832 aa17.38■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 GOPCQ9HD26 462 aa17.38■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 UTP11Q9Y3A2 253 aaKnown RBP17.38■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 IPO5O00410 1097 aaKnown RBP17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ERLIN2O94905 339 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 HADHBP55084 474 aaKnown RBP17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 SATB1Q01826 763 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 PPP3CAQ08209 521 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 DHX9Q08211 1270 aaKnown RBP17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ZNF211Q13398 564 aaPredicted RBP17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 C1orf220Q5T0J3 134 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 DUPD1Q68J44 220 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 RUFY4Q6ZNE9 571 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 FMNL3Q8IVF7 1028 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 SYCP3Q8IZU3 236 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 CNKSR2Q8WXI2 1034 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ADARB2Q9NS39 739 aaKnown RBP17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 CNOT8Q9UFF9 292 aaKnown RBP17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ZBTB21Q9ULJ3 1066 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 EMSYQ7Z589 1322 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 PPFIA2O75334 1257 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ITGB5P18084 799 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 INPP5BP32019 993 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 SETQ01105 290 aaPredicted RBP17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 PADI6Q6TGC4 694 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 ARFGAP2Q8N6H7 521 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 CHURC1Q8WUH1 139 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 MXRA8Q9BRK3 442 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 DEFB129Q9H1M3 183 aa17.37■□□□□ 0.37
MSH5-SAPCD1-208ENST00000498473 PCIF1Q9H4Z3 704 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms