RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 FERP16591 822 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 RARRES1P49788 294 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 PEX3P56589 373 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 MTMR2Q13614 643 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 SLC35G2Q8TBE7 412 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 SYTL5Q8TDW5 730 aaPredicted RBP17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 PSMD1Q99460 953 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 EPN3Q9H201 632 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 UBE2TQ9NPD8 197 aaPredicted RBP17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 ODF2LQ9ULJ1 636 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 BUB1BO60566 1050 aaPredicted RBP17.87■□□□□ 0.45
CCDC88B-210ENST00000494566 IRX3P78415 501 aaPredicted RBP17.87■□□□□ 0.45
CCDC88B-210ENST00000494566 IFFO1Q0D2I5 559 aa17.87■□□□□ 0.45
CCDC88B-210ENST00000494566 SAMD7Q7Z3H4 446 aa17.87■□□□□ 0.45
CCDC88B-210ENST00000494566 PRPF38AQ8NAV1 312 aaKnown RBP17.87■□□□□ 0.45
CCDC88B-210ENST00000494566 PLEKHO2Q8TD55 490 aa17.87■□□□□ 0.45
CCDC88B-210ENST00000494566 STK33Q9BYT3 514 aa17.87■□□□□ 0.45
CCDC88B-210ENST00000494566 THAP2Q9H0W7 228 aa17.87■□□□□ 0.45
CCDC88B-210ENST00000494566 AGO4Q9HCK5 861 aaKnown RBP17.87■□□□□ 0.45
CCDC88B-210ENST00000494566 APEX2Q9UBZ4 518 aa17.87■□□□□ 0.45
CCDC88B-210ENST00000494566 NENFQ9UMX5 172 aa17.87■□□□□ 0.45
CCDC88B-210ENST00000494566 PSME4Q14997 1843 aa17.87■□□□□ 0.45
CCDC88B-210ENST00000494566 FOXO6A8MYZ6 492 aa17.87■□□□□ 0.45
CCDC88B-210ENST00000494566 GUCY2CP25092 1073 aa17.87■□□□□ 0.45
CCDC88B-210ENST00000494566 ECHS1P30084 290 aa17.87■□□□□ 0.45
CCDC88B-210ENST00000494566 ZNF844Q08AG5 666 aa17.87■□□□□ 0.45
CCDC88B-210ENST00000494566 SEL1LQ9UBV2 794 aa17.87■□□□□ 0.45
CCDC88B-210ENST00000494566 PPP1R9AQ9ULJ8 1098 aa17.87■□□□□ 0.45
CCDC88B-210ENST00000494566 MEFVO15553 781 aaPredicted RBP17.86■□□□□ 0.45
CCDC88B-210ENST00000494566 P4HBP07237 508 aaKnown RBP17.86■□□□□ 0.45
CCDC88B-210ENST00000494566 CPNE8Q86YQ8 564 aa17.86■□□□□ 0.45
CCDC88B-210ENST00000494566 RIT2Q99578 217 aa17.86■□□□□ 0.45
CCDC88B-210ENST00000494566 SELENOSQ9BQE4 189 aa17.86■□□□□ 0.45
CCDC88B-210ENST00000494566 RIPK3Q9Y572 518 aa17.86■□□□□ 0.45
CCDC88B-210ENST00000494566 GTPBP10A4D1E9 387 aaKnown RBP17.86■□□□□ 0.45
CCDC88B-210ENST00000494566 TBC1D12O60347 775 aa17.86■□□□□ 0.45
CCDC88B-210ENST00000494566 KRT13P13646 458 aa17.86■□□□□ 0.45
CCDC88B-210ENST00000494566 YWHABP31946 246 aaKnown RBP17.86■□□□□ 0.45
CCDC88B-210ENST00000494566 CCDC38Q502W7 563 aa17.86■□□□□ 0.45
CCDC88B-210ENST00000494566 FAM102BQ5T8I3 360 aa17.86■□□□□ 0.45
CCDC88B-210ENST00000494566 CEP57Q86XR8 500 aa17.86■□□□□ 0.45
CCDC88B-210ENST00000494566 SAAL1Q96ER3 474 aa17.86■□□□□ 0.45
CCDC88B-210ENST00000494566 GOLGA6L7A0A1B0GV03 622 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 SHBGP04278 402 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 IFNAR2P48551 515 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 SKOR1P84550 965 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 E2F5Q15329 346 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 C10orf76Q5T2E6 689 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 KDM7AQ6ZMT4 941 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 STXBP4Q6ZWJ1 553 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 FAM83AQ86UY5 434 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 SLC30A5Q8TAD4 765 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 POP1Q99575 1024 aaKnown RBP17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 MLXIPLQ9NP71 852 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 DNAJC17Q9NVM6 304 aaKnown RBP17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 QARSP47897 775 aaKnown RBP17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 ADCY1Q08828 1119 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 NT5DC3Q86UY8 548 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 CCDC127Q96BQ5 260 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 CYFIP2Q96F07 1278 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 SCLT1Q96NL6 688 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 MKNK1Q9BUB5 465 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 STRA6Q9BX79 667 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 LARSQ9P2J5 1176 aaKnown RBP17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 RNF14Q9UBS8 474 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 USP20Q9Y2K6 914 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 SNX24Q9Y343 169 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 ATMINO43313 823 aaPredicted RBP17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 CCNE2O96020 404 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 CALCAP01258 141 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 ZBTB48P10074 688 aaPredicted RBP17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 TNFAIP3P21580 790 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 PLTPP55058 493 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 PHLDB2Q86SQ0 1253 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 KIRREL3Q8IZU9 778 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 LMO3Q8TAP4 145 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 CCDC114Q96M63 670 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 RMDN3Q96TC7 470 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 ERVK-5Q9HDB9 667 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 PNMA2Q9UL42 364 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 COG5Q9UP83 839 aa17.85■□□□□ 0.45
CCDC88B-210ENST00000494566 CCDC169A6NNP5 214 aa17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 BTNL10A8MVZ5 291 aa17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 PGRMC1O00264 195 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 VCAM1P19320 739 aa17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 HAUS6Q7Z4H7 955 aa17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 CCDC25Q86WR0 208 aa17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 HSPBP1Q9NZL4 362 aa17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 PTPN22Q9Y2R2 807 aa17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 RPTORQ8N122 1335 aa17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 VAMP7P51809 220 aa17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 PGM5Q15124 567 aa17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 GLE1Q53GS7 698 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 XKR9Q5GH70 373 aa17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 C1orf220Q5T0J3 134 aa17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 ATG4CQ96DT6 458 aa17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 TEPSINQ96N21 525 aa17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 RPAP3Q9H6T3 665 aaPredicted RBP17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 TMBIM4Q9HC24 238 aa17.84■□□□□ 0.45
CCDC88B-210ENST00000494566 HAUS2Q9NVX0 235 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms