RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 PDIA5Q14554 519 aa7.57□□□□□ -1.2
VPS52-219ENST00000493379 KIAA0753Q2KHM9 967 aa7.57□□□□□ -1.2
VPS52-219ENST00000493379 TRIM71Q2Q1W2 868 aaKnown RBP7.57□□□□□ -1.2
VPS52-219ENST00000493379 MARCH8Q5T0T0 291 aa7.57□□□□□ -1.2
VPS52-219ENST00000493379 FAM43BQ6ZT52 329 aaPredicted RBP7.57□□□□□ -1.2
VPS52-219ENST00000493379 BRAPQ7Z569 592 aa7.57□□□□□ -1.2
VPS52-219ENST00000493379 BMP8AQ7Z5Y6 402 aa7.57□□□□□ -1.2
VPS52-219ENST00000493379 NPAS4Q8IUM7 802 aa7.57□□□□□ -1.2
VPS52-219ENST00000493379 ARNTL2Q8WYA1 636 aa7.57□□□□□ -1.2
VPS52-219ENST00000493379 TNPO1Q92973 898 aaKnown RBP7.57□□□□□ -1.2
VPS52-219ENST00000493379 VTI1AQ96AJ9 217 aa7.57□□□□□ -1.2
VPS52-219ENST00000493379 CHAMP1Q96JM3 812 aa7.57□□□□□ -1.2
VPS52-219ENST00000493379 CEP89Q96ST8 783 aa7.57□□□□□ -1.2
VPS52-219ENST00000493379 C2orf49Q9BVC5 232 aaPredicted RBP7.57□□□□□ -1.2
VPS52-219ENST00000493379 NIFKQ9BYG3 293 aaKnown RBP7.57□□□□□ -1.2
VPS52-219ENST00000493379 DISC1Q9NRI5 854 aa7.57□□□□□ -1.2
VPS52-219ENST00000493379 ERAP1Q9NZ08 941 aa7.57□□□□□ -1.2
VPS52-219ENST00000493379 HDAC6Q9UBN7 1215 aa7.57□□□□□ -1.2
VPS52-219ENST00000493379 DCTN4Q9UJW0 460 aa7.57□□□□□ -1.2
VPS52-219ENST00000493379 MTMR6Q9Y217 621 aa7.57□□□□□ -1.2
VPS52-219ENST00000493379 WASF2Q9Y6W5 498 aa7.57□□□□□ -1.2
VPS52-219ENST00000493379 SPEGQ15772 3267 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.56□□□□□ -1.2
VPS52-219ENST00000493379 RRN3P2A6NIE6 340 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 WDR64B1ANS9 1081 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 ZBTB42B2RXF5 422 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 EML1O00423 815 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 CDK2AP1O14519 115 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 TLR3O15455 904 aaKnown RBP7.56□□□□□ -1.2
VPS52-219ENST00000493379 STX6O43752 255 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 ZNF862O60290 1169 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 HBP1O60381 514 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 B4GALT4O60513 344 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 GAS7O60861 476 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 CAND2O75155 1236 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 BAG4O95429 457 aaKnown RBP7.56□□□□□ -1.2
VPS52-219ENST00000493379 TIMP1P01033 207 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 PSAPP07602 524 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 XRCC6P12956 609 aaKnown RBP eCLIP7.56□□□□□ -1.2
VPS52-219ENST00000493379 MUTP22033 750 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 DDIT3P35638 169 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 NBL1P41271 181 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 PSMA6P60900 246 aaKnown RBP7.56□□□□□ -1.2
VPS52-219ENST00000493379 GUCY1B3Q02153 619 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 FOXC1Q12948 553 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 CBLBQ13191 982 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 MMRN1Q13201 1228 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 CLN3Q13286 438 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 GRB10Q13322 594 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 PUM1Q14671 1186 aaKnown RBP eCLIP7.56□□□□□ -1.2
VPS52-219ENST00000493379 PLCB4Q15147 1175 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 EPHA7Q15375 998 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 TARBP2Q15633 366 aaKnown RBP7.56□□□□□ -1.2
VPS52-219ENST00000493379 LRCH2Q5VUJ6 765 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 ARL6IP4Q66PJ3 421 aaKnown RBP7.56□□□□□ -1.2
VPS52-219ENST00000493379 GDF6Q6KF10 455 aaPredicted RBP7.56□□□□□ -1.2
VPS52-219ENST00000493379 MIS18BP1Q6P0N0 1132 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 C16orf46Q6P387 395 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 Q6ZVU0 165 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 SERINC5Q86VE9 423 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 CCDC60Q8IWA6 550 aaPredicted RBP7.56□□□□□ -1.2
VPS52-219ENST00000493379 HSCBQ8IWL3 235 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 C4orf19Q8IY42 314 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 KIAA2013Q8IYS2 634 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 FBXL6Q8N531 539 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 IGSF22Q8N9C0 903 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 ATP8B4Q8TF62 1192 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 VWCEQ96DN2 955 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 TEKT3Q9BXF9 490 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 KLF16Q9BXK1 252 aaPredicted RBP7.56□□□□□ -1.2
VPS52-219ENST00000493379 SAP130Q9H0E3 1048 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 TMEM60Q9H2L4 133 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 UNC45AQ9H3U1 944 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 ZSCAN16Q9H4T2 348 aaPredicted RBP7.56□□□□□ -1.2
VPS52-219ENST00000493379 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.56□□□□□ -1.2
VPS52-219ENST00000493379 ZNF215Q9UL58 517 aaPredicted RBP7.56□□□□□ -1.2
VPS52-219ENST00000493379 PCDHA12Q9UN75 941 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 PPME1Q9Y570 386 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 USP3Q9Y6I4 520 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 ZZEF1O43149 2961 aa7.56□□□□□ -1.2
VPS52-219ENST00000493379 IGSF9BQ9UPX0 1349 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 IGKV6-21A0A0C4DH24 114 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 H3BQ06 376 aaPredicted RBP7.55□□□□□ -1.2
VPS52-219ENST00000493379 NEMFO60524 1076 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 LPXNO60711 386 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 SLITRK3O94933 977 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 FAM13AO94988 1023 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 PARNO95453 639 aaKnown RBP7.55□□□□□ -1.2
VPS52-219ENST00000493379 RPLP2P05387 115 aaKnown RBP7.55□□□□□ -1.2
VPS52-219ENST00000493379 P4HBP07237 508 aaKnown RBP7.55□□□□□ -1.2
VPS52-219ENST00000493379 CA3P07451 260 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 ZNF286BP0CG31 522 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 SMIM10L2AP0DMW4 78 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 SMIM10L2BP0DMW5 78 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 GNAT1P11488 350 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 MAPK1P28482 360 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 ATP2C1P98194 919 aaPredicted RBP7.55□□□□□ -1.2
VPS52-219ENST00000493379 RESTQ13127 1097 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 GPNMBQ14956 572 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 TLR1Q15399 786 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms