RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 GADL1Q6ZQY3 521 aa22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 CYFIP1Q7L576 1253 aa22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 GLYCTKQ8IVS8 523 aa22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 ZNF526Q8TF50 670 aaPredicted RBP22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 SAAL1Q96ER3 474 aa22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 TMEM117Q9H0C3 514 aa22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 RNF181Q9P0P0 153 aa22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 A0A0A6YYK5 440 aaPredicted RBP22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 ATG7O95352 703 aa22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 MXI1P50539 228 aa22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 GABPB1Q06547 395 aaPredicted RBP22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 LRRC57Q8N9N7 239 aa22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 UPF1Q92900 1129 aaKnown RBP eCLIP22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 MS4A14Q96JA4 679 aa22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 UBE2TQ9NPD8 197 aaPredicted RBP22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 RNF14Q9UBS8 474 aa22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 PACSIN2Q9UNF0 486 aaPredicted RBP22.9■■□□□ 1.26
CCDC88B-208ENST00000492980 SYNGAP1Q96PV0 1343 aa22.89■■□□□ 1.26
CCDC88B-208ENST00000492980 FOXN3O00409 490 aaPredicted RBP22.89■■□□□ 1.25
CCDC88B-208ENST00000492980 NOP2P46087 812 aaKnown RBP22.89■■□□□ 1.25
CCDC88B-208ENST00000492980 FHDC1Q9C0D6 1143 aaPredicted RBP22.89■■□□□ 1.25
CCDC88B-208ENST00000492980 POLR3FQ9H1D9 316 aaPredicted RBP22.89■■□□□ 1.25
CCDC88B-208ENST00000492980 ELP3Q9H9T3 547 aa22.89■■□□□ 1.25
CCDC88B-208ENST00000492980 USP20Q9Y2K6 914 aa22.89■■□□□ 1.25
CCDC88B-208ENST00000492980 A0A0G2JLL6 359 aaPredicted RBP22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 IRF6O14896 467 aa22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 ATP4AP20648 1035 aa22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 IREB2P48200 963 aaKnown RBP22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 MTERF2Q49AM1 385 aa22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 CFAP221Q4G0U5 840 aa22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 SEPT14Q6ZU15 432 aa22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 PRRT2Q7Z6L0 340 aaPredicted RBP22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 PROCA1Q8NCQ7 364 aaPredicted RBP22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 TPCN2Q8NHX9 752 aa22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 SPATC1LQ9H0A9 340 aa22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 MAFBQ9Y5Q3 323 aaPredicted RBP22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 LRRC37A2A6NM11 1700 aa22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 DNA2P51530 1060 aa22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 GALCP54803 685 aa22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 VTI1AQ96AJ9 217 aa22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 FBXL18Q96ME1 805 aa22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 SPON1Q9HCB6 807 aa22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 ZNF302Q9NR11 478 aa22.88■■□□□ 1.25
CCDC88B-208ENST00000492980 SOWAHBA6NEL2 793 aa22.87■■□□□ 1.25
CCDC88B-208ENST00000492980 EDNRBP24530 442 aa22.87■■□□□ 1.25
CCDC88B-208ENST00000492980 PPATQ06203 517 aa22.87■■□□□ 1.25
CCDC88B-208ENST00000492980 SMC1AQ14683 1233 aaKnown RBP22.87■■□□□ 1.25
CCDC88B-208ENST00000492980 CCDC70Q6NSX1 233 aa22.87■■□□□ 1.25
CCDC88B-208ENST00000492980 TAS1R3Q7RTX0 852 aa22.87■■□□□ 1.25
CCDC88B-208ENST00000492980 PARD3BQ8TEW8 1205 aa22.87■■□□□ 1.25
CCDC88B-208ENST00000492980 OTUD5Q96G74 571 aa22.87■■□□□ 1.25
CCDC88B-208ENST00000492980 ARHGAP28Q9P2N2 729 aa22.87■■□□□ 1.25
CCDC88B-208ENST00000492980 ZMYND10O75800 440 aa22.87■■□□□ 1.25
CCDC88B-208ENST00000492980 MATR3P43243 847 aaKnown RBP eCLIP22.87■■□□□ 1.25
CCDC88B-208ENST00000492980 EMC2Q15006 297 aa22.87■■□□□ 1.25
CCDC88B-208ENST00000492980 MSL3Q8N5Y2 521 aaKnown RBP22.87■■□□□ 1.25
CCDC88B-208ENST00000492980 CLMNQ96JQ2 1002 aa22.87■■□□□ 1.25
CCDC88B-208ENST00000492980 IFT74Q96LB3 600 aa22.87■■□□□ 1.25
CCDC88B-208ENST00000492980 MFSD14AQ96MC6 490 aa22.87■■□□□ 1.25
CCDC88B-208ENST00000492980 LRRC1Q9BTT6 524 aa22.87■■□□□ 1.25
CCDC88B-208ENST00000492980 NCANO14594 1321 aa22.86■■□□□ 1.25
CCDC88B-208ENST00000492980 LRRIQ3A6PVS8 624 aaPredicted RBP22.86■■□□□ 1.25
CCDC88B-208ENST00000492980 OATP04181 439 aa22.86■■□□□ 1.25
CCDC88B-208ENST00000492980 UBA1P22314 1058 aaKnown RBP22.86■■□□□ 1.25
CCDC88B-208ENST00000492980 MAP2K1Q02750 393 aaPredicted RBP22.86■■□□□ 1.25
CCDC88B-208ENST00000492980 CASP8Q14790 479 aa22.86■■□□□ 1.25
CCDC88B-208ENST00000492980 NCAPG2Q86XI2 1143 aa22.86■■□□□ 1.25
CCDC88B-208ENST00000492980 POMGNT1Q8WZA1 660 aa22.86■■□□□ 1.25
CCDC88B-208ENST00000492980 CCDC127Q96BQ5 260 aa22.86■■□□□ 1.25
CCDC88B-208ENST00000492980 GOLPH3Q9H4A6 298 aa22.86■■□□□ 1.25
CCDC88B-208ENST00000492980 RBM12Q9NTZ6 932 aaKnown RBP22.86■■□□□ 1.25
CCDC88B-208ENST00000492980 KIF4AO95239 1232 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 TMEM253P0C7T8 217 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 TNFAIP3P21580 790 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 IRX3P78415 501 aaPredicted RBP22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 RPS6KA1Q15418 735 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 BRDTQ58F21 947 aaPredicted RBP22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 SLFN11Q7Z7L1 901 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 TMC2Q8TDI7 906 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 IGKV6D-21A0A0A0MT36 114 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 TMCO5BA8MYB1 307 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 H0YCG3 227 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 CES2O00748 559 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 HNRNPDLO14979 420 aaKnown RBP22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 CNMDO75829 334 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 GARTP22102 1010 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 POLGP54098 1239 aaPredicted RBP22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 MAP9Q49MG5 647 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 ERO1BQ86YB8 467 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 HDAC7Q8WUI4 952 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 RUBCNQ92622 972 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 SEMA4DQ92854 862 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 KAT5Q92993 513 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 AGPAT1Q99943 283 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 PAGR1Q9BTK6 254 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 SIP14410 1827 aa22.85■■□□□ 1.25
CCDC88B-208ENST00000492980 OAS2P29728 719 aaKnown RBP22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 CYP24A1Q07973 514 aa22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 KRT39Q6A163 491 aa22.84■■□□□ 1.25
CCDC88B-208ENST00000492980 CCNI2Q6ZMN8 369 aaPredicted RBP22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms