RNA–Protein interactions for RNA: ENST00000492275.5

TTC3-223, Transcript of tetratricopeptide repeat domain 3, human

TSL 3

Gene TTC3, Length 769 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-223	ENST00000492275	PRDM12	Q9H4Q4	367 aa		28.48	■■■□□ 2.15
TTC3-223	ENST00000492275	ODF2L	Q9ULJ1	636 aa		28.48	■■■□□ 2.15
TTC3-223	ENST00000492275	KIAA1671	Q9BY89	1806 aa		28.48	■■■□□ 2.15
TTC3-223	ENST00000492275	CHD9	Q3L8U1	2897 aa		28.48	■■■□□ 2.15
TTC3-223	ENST00000492275	RALGAPA2	Q2PPJ7	1873 aa		28.47	■■■□□ 2.15
TTC3-223	ENST00000492275	LINC00271	P0C7V0	271 aa		28.47	■■■□□ 2.15
TTC3-223	ENST00000492275	NCBP1	Q09161	790 aa	Known RBP	28.47	■■■□□ 2.15
TTC3-223	ENST00000492275	E2F4	Q16254	413 aa		28.47	■■■□□ 2.15
TTC3-223	ENST00000492275	MAPK6	Q16659	721 aa		28.47	■■■□□ 2.15
TTC3-223	ENST00000492275	PAN2	Q504Q3	1202 aa	Known RBP	28.47	■■■□□ 2.15
TTC3-223	ENST00000492275	RESP18	Q5W5W9	173 aa		28.47	■■■□□ 2.15
TTC3-223	ENST00000492275	NOTUM	Q6P988	496 aa		28.47	■■■□□ 2.15
TTC3-223	ENST00000492275	RNF169	Q8NCN4	708 aa		28.47	■■■□□ 2.15
TTC3-223	ENST00000492275	ARNTL2	Q8WYA1	636 aa		28.47	■■■□□ 2.15
TTC3-223	ENST00000492275	PRIMPOL	Q96LW4	560 aa		28.47	■■■□□ 2.15
TTC3-223	ENST00000492275	C17orf80	Q9BSJ5	609 aa		28.47	■■■□□ 2.15
TTC3-223	ENST00000492275	KMT5A	Q9NQR1	393 aa		28.47	■■■□□ 2.15
TTC3-223	ENST00000492275	ARHGAP28	Q9P2N2	729 aa		28.47	■■■□□ 2.15
TTC3-223	ENST00000492275	USP20	Q9Y2K6	914 aa		28.47	■■■□□ 2.15
TTC3-223	ENST00000492275	PCDHB2	Q9Y5E7	798 aa		28.47	■■■□□ 2.15
TTC3-223	ENST00000492275		A0A1B0GUA9	196 aa		28.46	■■■□□ 2.15
TTC3-223	ENST00000492275	RFXAP	O00287	272 aa		28.46	■■■□□ 2.15
TTC3-223	ENST00000492275	ACKR2	O00590	384 aa		28.46	■■■□□ 2.15
TTC3-223	ENST00000492275	PRKCB	P05771	671 aa		28.46	■■■□□ 2.15
TTC3-223	ENST00000492275	SKI	P12755	728 aa		28.46	■■■□□ 2.15
TTC3-223	ENST00000492275	ANP32A	P39687	249 aa	Known RBP	28.46	■■■□□ 2.15
TTC3-223	ENST00000492275	EFNA5	P52803	228 aa		28.46	■■■□□ 2.15
TTC3-223	ENST00000492275	SV2B	Q7L1I2	683 aa		28.46	■■■□□ 2.15
TTC3-223	ENST00000492275	SPIRE2	Q8WWL2	714 aa		28.46	■■■□□ 2.15
TTC3-223	ENST00000492275	MYLIP	Q8WY64	445 aa		28.46	■■■□□ 2.15
TTC3-223	ENST00000492275	CCDC51	Q96ER9	411 aa		28.46	■■■□□ 2.15
TTC3-223	ENST00000492275	EIF2A	Q9BY44	585 aa	Known RBP	28.46	■■■□□ 2.15
TTC3-223	ENST00000492275	MYMK	A6NI61	221 aa		28.45	■■■□□ 2.14
TTC3-223	ENST00000492275	TBKBP1	A7MCY6	615 aa		28.45	■■■□□ 2.14
TTC3-223	ENST00000492275	MEIS3P2	A8K0S8	358 aa		28.45	■■■□□ 2.14
TTC3-223	ENST00000492275		K7ERI5	159 aa		28.45	■■■□□ 2.14
TTC3-223	ENST00000492275	SLC16A4	O15374	487 aa		28.45	■■■□□ 2.14
TTC3-223	ENST00000492275	LIG1	P18858	919 aa		28.45	■■■□□ 2.14
TTC3-223	ENST00000492275	RAB27A	P51159	221 aa		28.45	■■■□□ 2.14
TTC3-223	ENST00000492275	LONRF3	Q496Y0	759 aa		28.45	■■■□□ 2.14
TTC3-223	ENST00000492275	CLLU1OS	Q5K130	101 aa		28.45	■■■□□ 2.14
TTC3-223	ENST00000492275	TAS1R3	Q7RTX0	852 aa		28.45	■■■□□ 2.14
TTC3-223	ENST00000492275	MRPL10	Q7Z7H8	261 aa	Known RBP	28.45	■■■□□ 2.14
TTC3-223	ENST00000492275	CDR2L	Q86X02	465 aa	Predicted RBP	28.45	■■■□□ 2.14
TTC3-223	ENST00000492275	LPP	Q93052	612 aa		28.45	■■■□□ 2.14
TTC3-223	ENST00000492275	CASD1	Q96PB1	797 aa		28.45	■■■□□ 2.14
TTC3-223	ENST00000492275	SCAND2P	Q9GZW5	306 aa	Predicted RBP	28.45	■■■□□ 2.14
TTC3-223	ENST00000492275	TMEM134	Q9H6X4	195 aa		28.45	■■■□□ 2.14
TTC3-223	ENST00000492275	MTUS1	Q9ULD2	1270 aa		28.45	■■■□□ 2.14
TTC3-223	ENST00000492275	MRPL42	Q9Y6G3	142 aa	Known RBP	28.45	■■■□□ 2.14
TTC3-223	ENST00000492275	CNTNAP2	Q9UHC6	1331 aa		28.44	■■■□□ 2.14
TTC3-223	ENST00000492275	KRT18	P05783	430 aa	Known RBP	28.44	■■■□□ 2.14
TTC3-223	ENST00000492275	ZNF131	P52739	623 aa		28.44	■■■□□ 2.14
TTC3-223	ENST00000492275	PRPF4B	Q13523	1007 aa	Known RBP	28.44	■■■□□ 2.14
TTC3-223	ENST00000492275	NT5DC1	Q5TFE4	455 aa		28.44	■■■□□ 2.14
TTC3-223	ENST00000492275	SMG8	Q8ND04	991 aa	Known RBP	28.44	■■■□□ 2.14
TTC3-223	ENST00000492275	CLP1	Q92989	425 aa	Known RBP	28.44	■■■□□ 2.14
TTC3-223	ENST00000492275	TMEM117	Q9H0C3	514 aa		28.44	■■■□□ 2.14
TTC3-223	ENST00000492275	KCNG1	Q9UIX4	513 aa		28.44	■■■□□ 2.14
TTC3-223	ENST00000492275	RBM19	Q9Y4C8	960 aa	Known RBP	28.44	■■■□□ 2.14
TTC3-223	ENST00000492275	ADAL	Q6DHV7	355 aa		28.43	■■■□□ 2.14
TTC3-223	ENST00000492275	DYM	Q7RTS9	669 aa		28.43	■■■□□ 2.14
TTC3-223	ENST00000492275	TMEM192	Q8IY95	271 aa		28.43	■■■□□ 2.14
TTC3-223	ENST00000492275	DDX12P	Q92771	950 aa		28.43	■■■□□ 2.14
TTC3-223	ENST00000492275	DHX58	Q96C10	678 aa		28.43	■■■□□ 2.14
TTC3-223	ENST00000492275	GDPD2	Q9HCC8	539 aa		28.43	■■■□□ 2.14
TTC3-223	ENST00000492275	FAM13B	Q9NYF5	915 aa		28.43	■■■□□ 2.14
TTC3-223	ENST00000492275	LARS	Q9P2J5	1176 aa	Known RBP	28.43	■■■□□ 2.14
TTC3-223	ENST00000492275	CHD7	Q9P2D1	2997 aa		28.42	■■■□□ 2.14
TTC3-223	ENST00000492275	HOXA2	O43364	376 aa		28.42	■■■□□ 2.14
TTC3-223	ENST00000492275	FAM13A	O94988	1023 aa		28.42	■■■□□ 2.14
TTC3-223	ENST00000492275	ADGRE1	Q14246	886 aa		28.42	■■■□□ 2.14
TTC3-223	ENST00000492275	EPC2	Q52LR7	807 aa		28.42	■■■□□ 2.14
TTC3-223	ENST00000492275	SLC27A1	Q6PCB7	646 aa		28.42	■■■□□ 2.14
TTC3-223	ENST00000492275	AGMO	Q6ZNB7	445 aa		28.42	■■■□□ 2.14
TTC3-223	ENST00000492275	LRRC55	Q6ZSA7	311 aa		28.42	■■■□□ 2.14
TTC3-223	ENST00000492275	MYCT1	Q8N699	235 aa		28.42	■■■□□ 2.14
TTC3-223	ENST00000492275	TMEM161B	Q8NDZ6	487 aa		28.42	■■■□□ 2.14
TTC3-223	ENST00000492275	HELQ	Q8TDG4	1101 aa		28.42	■■■□□ 2.14
TTC3-223	ENST00000492275	DNAJC19	Q96DA6	116 aa		28.42	■■■□□ 2.14
TTC3-223	ENST00000492275	PDZD7	Q9H5P4	517 aa		28.42	■■■□□ 2.14
TTC3-223	ENST00000492275	PARVG	Q9HBI0	331 aa		28.42	■■■□□ 2.14
TTC3-223	ENST00000492275	IPP	Q9Y573	584 aa		28.42	■■■□□ 2.14
TTC3-223	ENST00000492275	CDH23	Q9H251	3354 aa		28.42	■■■□□ 2.14
TTC3-223	ENST00000492275	PHLPP2	Q6ZVD8	1323 aa		28.42	■■■□□ 2.14
TTC3-223	ENST00000492275	POLR2D	O15514	142 aa	Known RBP	28.41	■■■□□ 2.14
TTC3-223	ENST00000492275	SMTN	P53814	917 aa		28.41	■■■□□ 2.14
TTC3-223	ENST00000492275	NCKAP1L	P55160	1127 aa		28.41	■■■□□ 2.14
TTC3-223	ENST00000492275	IQUB	Q8NA54	791 aa		28.41	■■■□□ 2.14
TTC3-223	ENST00000492275	STAM	Q92783	540 aa		28.41	■■■□□ 2.14
TTC3-223	ENST00000492275	PGBD4	Q96DM1	585 aa		28.41	■■■□□ 2.14
TTC3-223	ENST00000492275	SAMD11	Q96NU1	681 aa		28.41	■■■□□ 2.14
TTC3-223	ENST00000492275	ZHX3	Q9H4I2	956 aa		28.41	■■■□□ 2.14
TTC3-223	ENST00000492275	HCST	Q9UBK5	93 aa		28.41	■■■□□ 2.14
TTC3-223	ENST00000492275	CIZ1	Q9ULV3	898 aa	Predicted RBP	28.41	■■■□□ 2.14
TTC3-223	ENST00000492275	COL4A4	P53420	1690 aa	Predicted RBP	28.41	■■■□□ 2.14
TTC3-223	ENST00000492275	OFD1	O75665	1012 aa		28.4	■■■□□ 2.14
TTC3-223	ENST00000492275	NPTXR	O95502	500 aa		28.4	■■■□□ 2.14
TTC3-223	ENST00000492275	MAPT	P10636	758 aa	Known RBP	28.4	■■■□□ 2.14
TTC3-223	ENST00000492275	CMA1	P23946	247 aa		28.4	■■■□□ 2.14

Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms