RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 NR3C1P04150 777 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 CENPAP49450 140 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 IFT88Q13099 833 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 RHOT2Q8IXI1 618 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 STKLD1Q8NE28 680 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 ZC3H15Q8WU90 426 aaKnown RBP13.95□□□□□ -0.18
COL6A3-212ENST00000491769 MTBPQ96DY7 904 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 CEP95Q96GE4 821 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 TNIP3Q96KP6 325 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 UGGT1Q9NYU2 1555 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 UBXN8O00124 270 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 HAUS6Q7Z4H7 955 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 TTC13Q8NBP0 860 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 APPL2Q8NEU8 664 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 B4GALNT2Q8NHY0 566 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 TRIM55Q9BYV6 548 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 HPS4Q9NQG7 708 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 SH3GLB2Q9NR46 395 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 RAD18Q9NS91 495 aa13.95□□□□□ -0.18
COL6A3-212ENST00000491769 SAMSN1Q9NSI8 373 aaKnown RBP13.95□□□□□ -0.18
COL6A3-212ENST00000491769 LRG1P02750 347 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 KCNV1Q6PIU1 500 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 GJD4Q96KN9 370 aaPredicted RBP13.94□□□□□ -0.18
COL6A3-212ENST00000491769 PDE11AQ9HCR9 933 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 MAN1C1Q9NR34 630 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 ATP9BO43861 1147 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 CTNND1O60716 968 aaKnown RBP13.94□□□□□ -0.18
COL6A3-212ENST00000491769 CYTH2Q99418 400 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 LXNQ9BS40 222 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 PYGBP11216 843 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 CHRNA3P32297 505 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 CCT5P48643 541 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 PDCLQ13371 301 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 RFWD2Q8NHY2 731 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 BRIP1Q9BX63 1249 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 CAPN10Q9HC96 672 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 CCL15-CCL14A0A0B4J2E2 113 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 SUPT3HB4E1H0 165 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 MAP3K13O43283 966 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 NMT2O60551 498 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 ZRANB2O95218 330 aaKnown RBP eCLIP13.94□□□□□ -0.18
COL6A3-212ENST00000491769 FGGP02679 453 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 VAMP7P51809 220 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 SNCBQ16143 134 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 CCL15Q16663 113 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 KRT39Q6A163 491 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 ALKBH5Q6P6C2 394 aaKnown RBP13.94□□□□□ -0.18
COL6A3-212ENST00000491769 ZFP42Q96MM3 310 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 MROH7-TTC4A0A0A0MT08 1334 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 FRMD3A2A2Y4 597 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 SOWAHDA6NJG2 315 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 F5H6K3 240 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 HIST1H2AGP0C0S8 130 aaPredicted RBP13.94□□□□□ -0.18
COL6A3-212ENST00000491769 HIST1H2ADP20671 130 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 STAT5BP51692 787 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 KLRC3Q07444 240 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 MORF4L2Q15014 288 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 OOSP2Q86WS3 158 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 SPATS2Q86XZ4 545 aaKnown RBP13.94□□□□□ -0.18
COL6A3-212ENST00000491769 MYRIPQ8NFW9 859 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 ATXN7L3BQ96GX2 97 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 HIST1H2AHQ96KK5 128 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 FMO2Q99518 471 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 HIST1H2AJQ99878 128 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 H2AFJQ9BTM1 129 aa13.94□□□□□ -0.18
COL6A3-212ENST00000491769 SRPRBQ9Y5M8 271 aaKnown RBP13.94□□□□□ -0.18
COL6A3-212ENST00000491769 A0A0G2JND7 137 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 PRKCBP05771 671 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 TPI1P60174 286 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 SLC7A5Q01650 507 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 ROR1Q01973 937 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 FASTKD1Q53R41 847 aaKnown RBP13.93□□□□□ -0.18
COL6A3-212ENST00000491769 KHDRBS2Q5VWX1 349 aaKnown RBP13.93□□□□□ -0.18
COL6A3-212ENST00000491769 BRINP3Q76B58 766 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 FBXO41Q8TF61 875 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 KLHL29Q96CT2 875 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 ENTPD7Q9NQZ7 604 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 IFNAR1P17181 557 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 ADRA2BP18089 450 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 ALDH1A3P47895 512 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 KRT72Q14CN4 511 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 KYAT1Q16773 422 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 DPCR1Q3MIW9 517 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 C11orf96Q7Z7L8 435 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 NEK9Q8TD19 979 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 CELF1Q92879 486 aaKnown RBP13.93□□□□□ -0.18
COL6A3-212ENST00000491769 PPP1R13BQ96KQ4 1090 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 AIFM3Q96NN9 605 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 CACNA2D2Q9NY47 1150 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 ANKARQ7Z5J8 1434 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 POTEB3A0JP26 581 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 POTECB2RU33 542 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 KRT38O76015 456 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 MCAMP43121 646 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 AARSP49588 968 aaKnown RBP eCLIP13.93□□□□□ -0.18
COL6A3-212ENST00000491769 HSD17B4P51659 736 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 CCDC85BQ15834 202 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-212ENST00000491769 GRAMD1BQ3KR37 738 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 PRAMEF18Q5VWM3 479 aa13.93□□□□□ -0.18
COL6A3-212ENST00000491769 POTEBQ6S5H4 581 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms