RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 SLC30A1Q9Y6M5 507 aa4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 DVL2O14641 736 aa4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 CAND2O75155 1236 aa4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 GLRX3O76003 335 aaKnown RBP4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 KRT18P05783 430 aaKnown RBP4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 APEX1P27695 318 aaKnown RBP4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 CD38P28907 300 aa4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 MECP2P51608 486 aaKnown RBP4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 LMOD3Q0VAK6 560 aa4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 FOXL1Q12952 345 aa4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 PABPC4Q13310 644 aaKnown RBP eCLIP4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 PPP4R4Q6NUP7 873 aa4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 ZNF627Q7L945 461 aa4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 POLNQ7Z5Q5 900 aa4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 RTN4RL1Q86UN2 441 aaPredicted RBP4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 GPR135Q8IZ08 494 aa4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 CALML6Q8TD86 181 aa4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 BOCQ9BWV1 1114 aa4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 KRTAP1-5Q9BYS1 174 aa4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 PPCSQ9HAB8 311 aa4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 SAMD15Q9P1V8 674 aa4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 PLAAQ9Y263 795 aa4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 CECR2Q9BXF3 1484 aa4.06□□□□□ -1.76
DEPDC1-204ENST00000489862 FOXN1O15353 648 aa4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 DNAJC8O75937 253 aaPredicted RBP4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 SDSP20132 328 aa4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 MSX2P35548 267 aaPredicted RBP4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 NEK2P51955 445 aa4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 ALDH6A1Q02252 535 aaKnown RBP4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 HGFACQ04756 655 aa4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 ADAM15Q13444 863 aa4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 SAFB2Q14151 953 aaKnown RBP eCLIP4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 ZNF460Q14592 562 aa4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 ACAP1Q15027 740 aa4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 ZCCHC8Q6NZY4 707 aaKnown RBP4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 CC2D1AQ6P1N0 951 aaPredicted RBP4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 SLC4A10Q6U841 1118 aa4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 DDX53Q86TM3 631 aaKnown RBP4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 ZNF808Q8N4W9 903 aaPredicted RBP4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 SAMD3Q8N6K7 520 aa4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 PNISRQ8TF01 805 aaKnown RBP4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 CAAP1Q9H8G2 361 aa4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 PLA2G3Q9NZ20 509 aa4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 NRBP1Q9UHY1 535 aa4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 TNPO3Q9Y5L0 923 aaKnown RBP4.05□□□□□ -1.76
DEPDC1-204ENST00000489862 TRAF5O00463 557 aa4.04□□□□□ -1.76
DEPDC1-204ENST00000489862 OPA1O60313 960 aa4.04□□□□□ -1.76
DEPDC1-204ENST00000489862 MYL1P05976 194 aa4.04□□□□□ -1.76
DEPDC1-204ENST00000489862 IGFALSP35858 605 aa4.04□□□□□ -1.76
DEPDC1-204ENST00000489862 RPS19P39019 145 aaKnown RBP4.04□□□□□ -1.76
DEPDC1-204ENST00000489862 RGS3P49796 1198 aa4.04□□□□□ -1.76
DEPDC1-204ENST00000489862 KIF11P52732 1056 aa4.04□□□□□ -1.76
DEPDC1-204ENST00000489862 GRM7Q14831 915 aa4.04□□□□□ -1.76
DEPDC1-204ENST00000489862 ARHGAP44Q17R89 818 aa4.04□□□□□ -1.76
DEPDC1-204ENST00000489862 FNDC3BQ53EP0 1204 aaKnown RBP4.04□□□□□ -1.76
DEPDC1-204ENST00000489862 ERAP2Q6P179 960 aa4.04□□□□□ -1.76
DEPDC1-204ENST00000489862 MAMDC4Q6UXC1 1216 aa4.04□□□□□ -1.76
DEPDC1-204ENST00000489862 CHPFQ8IZ52 775 aa4.04□□□□□ -1.76
DEPDC1-204ENST00000489862 SVIPQ8NHG7 77 aa4.04□□□□□ -1.76
DEPDC1-204ENST00000489862 HOOK2Q96ED9 719 aa4.04□□□□□ -1.76
DEPDC1-204ENST00000489862 TMEM176AQ96HP8 235 aa4.04□□□□□ -1.76
DEPDC1-204ENST00000489862 CDH19Q9H159 772 aa4.04□□□□□ -1.76
DEPDC1-204ENST00000489862 AGO3Q9H9G7 860 aaKnown RBP4.04□□□□□ -1.76
DEPDC1-204ENST00000489862 PTPDC1A2A3K4 754 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 FOSP01100 380 aaPredicted RBP4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 SERPINB3P29508 390 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 NEK3P51956 506 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 ANTXR2P58335 489 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 SLC6A3Q01959 620 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 COL10A1Q03692 680 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 VPS72Q15906 364 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 CCDC184Q52MB2 194 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 INO80DQ53TQ3 878 aaPredicted RBP4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 FNDC7Q5VTL7 733 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 IL31Q6EBC2 164 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 KRBA2Q6ZNG9 492 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 SKAP1Q86WV1 359 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 CHST14Q8NCH0 376 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 COG1Q8WTW3 980 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 MTMR8Q96EF0 704 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 FAM89AQ96GI7 184 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 FOXB1Q99853 325 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 TMX4Q9H1E5 349 aaPredicted RBP4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 TMX1Q9H3N1 280 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 FBXO9Q9UK97 447 aaPredicted RBP4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 DAAM1Q9Y4D1 1078 aa4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 EIF4G1Q04637 1599 aaKnown RBP4.03□□□□□ -1.76
DEPDC1-204ENST00000489862 B4E1Z4 1266 aa4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 ALG1L2C9J202 215 aa4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 GABRDO14764 452 aa4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 SLC26A4O43511 780 aa4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 PRLP01236 227 aa4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 ASLP04424 464 aa4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 PTX3P26022 381 aaPredicted RBP4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 HIBADHP31937 336 aaKnown RBP4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 ATP2C1P98194 919 aaPredicted RBP4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 MAP3K12Q12852 859 aa4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 PIN1Q13526 163 aaPredicted RBP4.03□□□□□ -1.77
DEPDC1-204ENST00000489862 BRD3Q15059 726 aa4.03□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms