RNA–Protein interactions for RNA: ENST00000487747.5

SMC4-219, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 637 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-219ENST00000487747 LRRC32Q14392 662 aa6.28□□□□□ -1.4
SMC4-219ENST00000487747 SEPT7Q16181 437 aaKnown RBP6.28□□□□□ -1.4
SMC4-219ENST00000487747 NAIF1Q69YI7 327 aaPredicted RBP6.28□□□□□ -1.4
SMC4-219ENST00000487747 CNNM4Q6P4Q7 775 aa6.28□□□□□ -1.4
SMC4-219ENST00000487747 KIF18BQ86Y91 864 aa6.28□□□□□ -1.4
SMC4-219ENST00000487747 MSL3Q8N5Y2 521 aaKnown RBP6.28□□□□□ -1.4
SMC4-219ENST00000487747 GPR150Q8NGU9 434 aa6.28□□□□□ -1.4
SMC4-219ENST00000487747 HAS1Q92839 578 aa6.28□□□□□ -1.4
SMC4-219ENST00000487747 ZNF768Q9H5H4 540 aaKnown RBP6.28□□□□□ -1.4
SMC4-219ENST00000487747 PCDHB6Q9Y5E3 794 aa6.28□□□□□ -1.4
SMC4-219ENST00000487747 PFKMP08237 780 aa6.27□□□□□ -1.41
SMC4-219ENST00000487747 MAN2A1Q16706 1144 aa6.27□□□□□ -1.41
SMC4-219ENST00000487747 MBNL2Q5VZF2 373 aaKnown RBP6.27□□□□□ -1.41
SMC4-219ENST00000487747 ZNF575Q86XF7 245 aa6.27□□□□□ -1.41
SMC4-219ENST00000487747 DHX37Q8IY37 1157 aaKnown RBP6.27□□□□□ -1.41
SMC4-219ENST00000487747 CPT1CQ8TCG5 803 aa6.27□□□□□ -1.41
SMC4-219ENST00000487747 ZG16BQ96DA0 208 aa6.27□□□□□ -1.41
SMC4-219ENST00000487747 GPR101Q96P66 508 aaPredicted RBP6.27□□□□□ -1.41
SMC4-219ENST00000487747 LSM14BQ9BX40 385 aaKnown RBP6.27□□□□□ -1.41
SMC4-219ENST00000487747 SPTLC3Q9NUV7 552 aa6.27□□□□□ -1.41
SMC4-219ENST00000487747 PRSS38A1L453 326 aa6.26□□□□□ -1.41
SMC4-219ENST00000487747 SEC24DO94855 1032 aaPredicted RBP6.26□□□□□ -1.41
SMC4-219ENST00000487747 PROZP22891 400 aa6.26□□□□□ -1.41
SMC4-219ENST00000487747 PTGS2P35354 604 aa6.26□□□□□ -1.41
SMC4-219ENST00000487747 TCEA2Q15560 299 aa6.26□□□□□ -1.41
SMC4-219ENST00000487747 ESPNLQ6ZVH7 1005 aa6.26□□□□□ -1.41
SMC4-219ENST00000487747 APBB1IPQ7Z5R6 666 aaPredicted RBP6.26□□□□□ -1.41
SMC4-219ENST00000487747 LYSMD2Q8IV50 215 aa6.26□□□□□ -1.41
SMC4-219ENST00000487747 DNAJC10Q8IXB1 793 aa6.26□□□□□ -1.41
SMC4-219ENST00000487747 UNC5BQ8IZJ1 945 aa6.26□□□□□ -1.41
SMC4-219ENST00000487747 CDYL2Q8N8U2 506 aa6.26□□□□□ -1.41
SMC4-219ENST00000487747 SMC1BQ8NDV3 1235 aa6.26□□□□□ -1.41
SMC4-219ENST00000487747 OR5M3Q8NGP4 307 aa6.26□□□□□ -1.41
SMC4-219ENST00000487747 CPPED1Q9BRF8 314 aaPredicted RBP6.26□□□□□ -1.41
SMC4-219ENST00000487747 PRDM12Q9H4Q4 367 aa6.26□□□□□ -1.41
SMC4-219ENST00000487747 FANCLQ9NW38 375 aa6.26□□□□□ -1.41
SMC4-219ENST00000487747 TMPRSS11EQ9UL52 423 aa6.26□□□□□ -1.41
SMC4-219ENST00000487747 AHRRA9YTQ3 701 aa6.25□□□□□ -1.41
SMC4-219ENST00000487747 KPNA1P52294 538 aaPredicted RBP6.25□□□□□ -1.41
SMC4-219ENST00000487747 FAM189BP81408 668 aa6.25□□□□□ -1.41
SMC4-219ENST00000487747 DCAF17Q5H9S7 520 aaPredicted RBP6.25□□□□□ -1.41
SMC4-219ENST00000487747 XYLT1Q86Y38 959 aa6.25□□□□□ -1.41
SMC4-219ENST00000487747 SYNPOQ8N3V7 929 aa6.25□□□□□ -1.41
SMC4-219ENST00000487747 OR52N2Q8NGI0 321 aa6.25□□□□□ -1.41
SMC4-219ENST00000487747 GAB3Q8WWW8 586 aa6.25□□□□□ -1.41
SMC4-219ENST00000487747 NINJ1Q92982 152 aa6.25□□□□□ -1.41
SMC4-219ENST00000487747 LENG9Q96B70 501 aa6.25□□□□□ -1.41
SMC4-219ENST00000487747 TARS2Q9BW92 718 aaKnown RBP6.25□□□□□ -1.41
SMC4-219ENST00000487747 PCSK5Q92824 1860 aa6.24□□□□□ -1.41
SMC4-219ENST00000487747 MAFGO15525 162 aa6.24□□□□□ -1.41
SMC4-219ENST00000487747 SCAF4O95104 1147 aaKnown RBP6.24□□□□□ -1.41
SMC4-219ENST00000487747 MRPL49Q13405 166 aaKnown RBP6.24□□□□□ -1.41
SMC4-219ENST00000487747 CSRP2Q16527 193 aa6.24□□□□□ -1.41
SMC4-219ENST00000487747 C16orf86Q6ZW13 317 aa6.24□□□□□ -1.41
SMC4-219ENST00000487747 HOMER1Q86YM7 354 aa6.24□□□□□ -1.41
SMC4-219ENST00000487747 PROKR1Q8TCW9 393 aa6.24□□□□□ -1.41
SMC4-219ENST00000487747 FERMT2Q96AC1 680 aa6.24□□□□□ -1.41
SMC4-219ENST00000487747 EPC1Q9H2F5 836 aa6.24□□□□□ -1.41
SMC4-219ENST00000487747 FZD1Q9UP38 647 aa6.24□□□□□ -1.41
SMC4-219ENST00000487747 HS3ST4Q9Y661 456 aa6.24□□□□□ -1.41
SMC4-219ENST00000487747 COL4A3Q01955 1670 aa6.23□□□□□ -1.41
SMC4-219ENST00000487747 A0A1W2PR48 441 aa6.23□□□□□ -1.41
SMC4-219ENST00000487747 TMEM191CA6NGB0 347 aa6.23□□□□□ -1.41
SMC4-219ENST00000487747 DNAJC6O75061 913 aa6.23□□□□□ -1.41
SMC4-219ENST00000487747 CLEC2LP0C7M8 214 aa6.23□□□□□ -1.41
SMC4-219ENST00000487747 MGAT5Q09328 741 aa6.23□□□□□ -1.41
SMC4-219ENST00000487747 TERF2Q15554 542 aa6.23□□□□□ -1.41
SMC4-219ENST00000487747 TAS1R1Q7RTX1 841 aa6.23□□□□□ -1.41
SMC4-219ENST00000487747 PASD1Q8IV76 773 aa6.23□□□□□ -1.41
SMC4-219ENST00000487747 NIM1KQ8IY84 436 aa6.23□□□□□ -1.41
SMC4-219ENST00000487747 ANO3Q9BYT9 981 aa6.23□□□□□ -1.41
SMC4-219ENST00000487747 USP36Q9P275 1121 aaKnown RBP6.23□□□□□ -1.41
SMC4-219ENST00000487747 EVLQ9UI08 416 aaPredicted RBP6.23□□□□□ -1.41
SMC4-219ENST00000487747 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.23□□□□□ -1.415e-7■■■■□ 23.7
SMC4-219ENST00000487747 PPP2R3BQ9Y5P8 575 aa6.23□□□□□ -1.41
SMC4-219ENST00000487747 ST20-MTHFSA0A0A6YYL1 179 aa6.22□□□□□ -1.41
SMC4-219ENST00000487747 LEFTY2O00292 366 aa6.22□□□□□ -1.41
SMC4-219ENST00000487747 NRP1O14786 923 aa6.22□□□□□ -1.41
SMC4-219ENST00000487747 LPXNO60711 386 aa6.22□□□□□ -1.41
SMC4-219ENST00000487747 ITGB1P05556 798 aa6.22□□□□□ -1.41
SMC4-219ENST00000487747 BMP5P22003 454 aa6.22□□□□□ -1.41
SMC4-219ENST00000487747 APOBEC3AP31941 199 aaPredicted RBP6.22□□□□□ -1.41
SMC4-219ENST00000487747 ADCYAP1R1P41586 468 aa6.22□□□□□ -1.41
SMC4-219ENST00000487747 PHC1P78364 1004 aa6.22□□□□□ -1.41
SMC4-219ENST00000487747 TRIM25Q14258 630 aaKnown RBP6.22□□□□□ -1.41
SMC4-219ENST00000487747 UBE3CQ15386 1083 aa6.22□□□□□ -1.41
SMC4-219ENST00000487747 VPS72Q15906 364 aa6.22□□□□□ -1.41
SMC4-219ENST00000487747 SLC41A1Q8IVJ1 513 aa6.22□□□□□ -1.41
SMC4-219ENST00000487747 ZNF610Q8N9Z0 462 aa6.22□□□□□ -1.41
SMC4-219ENST00000487747 IL17RAQ96F46 866 aa6.22□□□□□ -1.41
SMC4-219ENST00000487747 DRC1Q96MC2 740 aa6.22□□□□□ -1.41
SMC4-219ENST00000487747 ZMYM3Q14202 1370 aa6.21□□□□□ -1.41
SMC4-219ENST00000487747 GRID2IPA4D2P6 1211 aa6.21□□□□□ -1.42
SMC4-219ENST00000487747 ABHD16AO95870 558 aa6.21□□□□□ -1.42
SMC4-219ENST00000487747 GCP02774 474 aa6.21□□□□□ -1.42
SMC4-219ENST00000487747 MANFP55145 182 aaKnown RBP6.21□□□□□ -1.42
SMC4-219ENST00000487747 PPARAQ07869 468 aa6.21□□□□□ -1.42
SMC4-219ENST00000487747 GPR158Q5T848 1215 aa6.21□□□□□ -1.42
SMC4-219ENST00000487747 LRRC55Q6ZSA7 311 aa6.21□□□□□ -1.42
SMC4-219ENST00000487747 FAM83AQ86UY5 434 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms