RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 IRAK3Q9Y616 596 aa15.52■□□□□ 0.08
SQSTM1-208ENST00000485412 ZBTB39O15060 712 aa15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 DDHD2O94830 711 aa15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 REC8O95072 547 aa15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 GALTP07902 379 aa15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 SKIP12755 728 aa15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 SFPQP23246 707 aaKnown RBP eCLIP15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 NONOQ15233 471 aaKnown RBP eCLIP15.51■□□□□ 0.075e-8■□□□□ 8.7
SQSTM1-208ENST00000485412 LETM2Q2VYF4 491 aa15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 NOMO2Q5JPE7 1267 aa15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 EARS2Q5JPH6 523 aaKnown RBP15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 GLB1LQ6UWU2 654 aa15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 AGMOQ6ZNB7 445 aa15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 CATSPER4Q7RTX7 472 aa15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 GPR149Q86SP6 731 aa15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 ZNF410Q86VK4 478 aa15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 CCDC105Q8IYK2 499 aa15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 TMEM143Q96AN5 459 aa15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 RTP3Q9BQQ7 232 aa15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 TRAIPQ9BWF2 469 aa15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 KCNMB3Q9NPA1 279 aa15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 CHST12Q9NRB3 414 aa15.51■□□□□ 0.07
SQSTM1-208ENST00000485412 PI15O43692 258 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 RFX1P22670 979 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 KLRC2P26717 231 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 PSMC5P62195 406 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 CDC42EP1Q00587 391 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 SCRN1Q12765 414 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 ANGPT1Q15389 498 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 UBXN11Q5T124 520 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 MOXD1Q6UVY6 613 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 SIX5Q8N196 739 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 DTWD2Q8NBA8 298 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 KCNG4Q8TDN1 519 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 HAS1Q92839 578 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 ZNF274Q96GC6 653 aaPredicted RBP15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 EMILIN2Q9BXX0 1053 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 AGPAT5Q9NUQ2 364 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 RGL1Q9NZL6 768 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 DUSP12Q9UNI6 340 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 PCDHB2Q9Y5E7 798 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 COL4A3BPQ9Y5P4 624 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 CYP46A1Q9Y6A2 500 aa15.5■□□□□ 0.07
SQSTM1-208ENST00000485412 GVINP1Q7Z2Y8 2422 aa15.49■□□□□ 0.07
SQSTM1-208ENST00000485412 STK25O00506 426 aa15.49■□□□□ 0.07
SQSTM1-208ENST00000485412 CPLX1O14810 134 aa15.49■□□□□ 0.07
SQSTM1-208ENST00000485412 SSBP05455 408 aaKnown RBP eCLIP15.49■□□□□ 0.07
SQSTM1-208ENST00000485412 NPR3P17342 541 aa15.49■□□□□ 0.07
SQSTM1-208ENST00000485412 HOXA11P31270 313 aaPredicted RBP15.49■□□□□ 0.07
SQSTM1-208ENST00000485412 DNM2P50570 870 aa15.49■□□□□ 0.07
SQSTM1-208ENST00000485412 PPP2R5CQ13362 524 aa15.49■□□□□ 0.07
SQSTM1-208ENST00000485412 PTPN14Q15678 1187 aa15.49■□□□□ 0.07
SQSTM1-208ENST00000485412 POTEDQ86YR6 584 aa15.49■□□□□ 0.07
SQSTM1-208ENST00000485412 PRPF31Q8WWY3 499 aaKnown RBP15.49■□□□□ 0.07
SQSTM1-208ENST00000485412 PHF20Q9BVI0 1012 aa15.49■□□□□ 0.07
SQSTM1-208ENST00000485412 C22orf23Q9BZE7 217 aa15.49■□□□□ 0.07
SQSTM1-208ENST00000485412 INO80BQ9C086 356 aaPredicted RBP15.49■□□□□ 0.07
SQSTM1-208ENST00000485412 KCNK12Q9HB15 430 aa15.49■□□□□ 0.07
SQSTM1-208ENST00000485412 DOCK8Q8NF50 2099 aa15.48■□□□□ 0.07
SQSTM1-208ENST00000485412 DOCK6Q96HP0 2047 aa15.48■□□□□ 0.07
SQSTM1-208ENST00000485412 F8W810 466 aa15.48■□□□□ 0.07
SQSTM1-208ENST00000485412 ZNF623O75123 536 aa15.48■□□□□ 0.07
SQSTM1-208ENST00000485412 SRGAP2CP0DJJ0 459 aa15.48■□□□□ 0.07
SQSTM1-208ENST00000485412 QARSP47897 775 aaKnown RBP15.48■□□□□ 0.07
SQSTM1-208ENST00000485412 RAB27AP51159 221 aa15.48■□□□□ 0.07
SQSTM1-208ENST00000485412 KRT25Q7Z3Z0 450 aa15.48■□□□□ 0.07
SQSTM1-208ENST00000485412 URGCPQ8TCY9 931 aa15.48■□□□□ 0.07
SQSTM1-208ENST00000485412 CEP170P1Q96L14 293 aa15.48■□□□□ 0.07
SQSTM1-208ENST00000485412 KLHL5Q96PQ7 755 aa15.48■□□□□ 0.07
SQSTM1-208ENST00000485412 LXNQ9BS40 222 aa15.48■□□□□ 0.07
SQSTM1-208ENST00000485412 DHX33Q9H6R0 707 aaKnown RBP15.48■□□□□ 0.07
SQSTM1-208ENST00000485412 IGSF9Q9P2J2 1179 aa15.48■□□□□ 0.07
SQSTM1-208ENST00000485412 STK39Q9UEW8 545 aa15.48■□□□□ 0.07
SQSTM1-208ENST00000485412 CTDNEP1O95476 244 aa15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 POMCP01189 267 aa15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 MYBP10242 640 aa15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 CLCN4P51793 760 aa15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 CYP4A11Q02928 519 aa15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 SPIRE1Q08AE8 756 aa15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 LAMTOR4Q0VGL1 99 aa15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 PIK3AP1Q6ZUJ8 805 aa15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 NEK8Q86SG6 692 aa15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 SMG8Q8ND04 991 aaKnown RBP15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 PGBD4Q96DM1 585 aa15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 DYDC2Q96IM9 177 aa15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 FAM193BQ96PV7 902 aaPredicted RBP15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 TM6SF1Q9BZW5 370 aa15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 SLKQ9H2G2 1235 aaPredicted RBP15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 PDRG1Q9NUG6 133 aa15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 MARCH5Q9NX47 278 aa15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 TPCN1Q9ULQ1 816 aa15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 MTCL1Q9Y4B5 1905 aaKnown RBP15.47■□□□□ 0.07
SQSTM1-208ENST00000485412 WNT7AO00755 349 aa15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 NARSO43776 548 aaKnown RBP15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 CCNT1O60563 726 aaKnown RBP15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 LILRB3O75022 631 aa15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 CFHP08603 1231 aa15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 CNPP09543 421 aaKnown RBP15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 GBP2P32456 591 aaPredicted RBP15.46■□□□□ 0.07
SQSTM1-208ENST00000485412 CTTNQ14247 550 aaKnown RBP15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms