RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 FAPQ12884 760 aa4.99□□□□□ -1.61
VPS50-217ENST00000485140 LY6G5CQ5SRR4 150 aa4.99□□□□□ -1.61
VPS50-217ENST00000485140 ARMC6Q6NXE6 501 aa4.99□□□□□ -1.61
VPS50-217ENST00000485140 TAS1R1Q7RTX1 841 aa4.99□□□□□ -1.61
VPS50-217ENST00000485140 NOP9Q86U38 636 aaKnown RBP4.99□□□□□ -1.61
VPS50-217ENST00000485140 IL17RAQ96F46 866 aa4.99□□□□□ -1.61
VPS50-217ENST00000485140 MMRN2Q9H8L6 949 aa4.99□□□□□ -1.61
VPS50-217ENST00000485140 THG1LQ9NWX6 298 aaKnown RBP4.99□□□□□ -1.61
VPS50-217ENST00000485140 MSRAQ9UJ68 235 aa4.99□□□□□ -1.61
VPS50-217ENST00000485140 CD2APQ9Y5K6 639 aa4.99□□□□□ -1.61
VPS50-217ENST00000485140 GAGE12BA1L429 117 aa4.98□□□□□ -1.61
VPS50-217ENST00000485140 GAGE12HA6NDE8 117 aa4.98□□□□□ -1.61
VPS50-217ENST00000485140 ULK1O75385 1050 aa4.98□□□□□ -1.61
VPS50-217ENST00000485140 HSP90B1P14625 803 aaKnown RBP4.98□□□□□ -1.61
VPS50-217ENST00000485140 SCNN1GP51170 649 aa4.98□□□□□ -1.61
VPS50-217ENST00000485140 RABGGTBP53611 331 aa4.98□□□□□ -1.61
VPS50-217ENST00000485140 IL2P60568 153 aa4.98□□□□□ -1.61
VPS50-217ENST00000485140 BLOC1S1P78537 153 aa4.98□□□□□ -1.61
VPS50-217ENST00000485140 MXRA7P84157 204 aa4.98□□□□□ -1.61
VPS50-217ENST00000485140 PTPAQ15257 358 aa4.98□□□□□ -1.61
VPS50-217ENST00000485140 DDB1Q16531 1140 aa4.98□□□□□ -1.61
VPS50-217ENST00000485140 C19orf54Q5BKX5 351 aa4.98□□□□□ -1.61
VPS50-217ENST00000485140 CNNM4Q6P4Q7 775 aa4.98□□□□□ -1.61
VPS50-217ENST00000485140 OR14C36Q8NHC7 312 aa4.98□□□□□ -1.61
VPS50-217ENST00000485140 CHTF18Q8WVB6 975 aa4.98□□□□□ -1.61
VPS50-217ENST00000485140 GAB3Q8WWW8 586 aa4.98□□□□□ -1.61
VPS50-217ENST00000485140 RTF1Q92541 710 aaKnown RBP4.98□□□□□ -1.61
VPS50-217ENST00000485140 SLKQ9H2G2 1235 aaPredicted RBP4.98□□□□□ -1.61
VPS50-217ENST00000485140 C11orf21Q9P2W6 132 aa4.98□□□□□ -1.61
VPS50-217ENST00000485140 FZD1Q9UP38 647 aa4.98□□□□□ -1.61
VPS50-217ENST00000485140 KLRG2A4D1S0 409 aaPredicted RBP4.97□□□□□ -1.61
VPS50-217ENST00000485140 B5MCH6 92 aa4.97□□□□□ -1.61
VPS50-217ENST00000485140 ENPP3O14638 875 aa4.97□□□□□ -1.61
VPS50-217ENST00000485140 HOXA3O43365 443 aaPredicted RBP4.97□□□□□ -1.61
VPS50-217ENST00000485140 ZEB2O60315 1214 aa4.97□□□□□ -1.61
VPS50-217ENST00000485140 PCDH8O95206 1070 aa4.97□□□□□ -1.61
VPS50-217ENST00000485140 ITGB1P05556 798 aa4.97□□□□□ -1.61
VPS50-217ENST00000485140 LTA4HP09960 611 aaKnown RBP4.97□□□□□ -1.61
VPS50-217ENST00000485140 SPATA31D3P0C874 917 aa4.97□□□□□ -1.61
VPS50-217ENST00000485140 HNRNPLP14866 589 aaKnown RBP eCLIP4.97□□□□□ -1.61
VPS50-217ENST00000485140 GZMKP49863 264 aa4.97□□□□□ -1.61
VPS50-217ENST00000485140 DHCR24Q15392 516 aa4.97□□□□□ -1.61
VPS50-217ENST00000485140 CRB2Q5IJ48 1285 aa4.97□□□□□ -1.61
VPS50-217ENST00000485140 DRICH1Q6PGQ1 229 aaPredicted RBP4.97□□□□□ -1.61
VPS50-217ENST00000485140 Q6ZRM9 215 aa4.97□□□□□ -1.61
VPS50-217ENST00000485140 SPATA31D4Q6ZUB0 917 aa4.97□□□□□ -1.61
VPS50-217ENST00000485140 KIAA0907Q7Z7F0 614 aaPredicted RBP4.97□□□□□ -1.61
VPS50-217ENST00000485140 ZNF276Q8N554 614 aa4.97□□□□□ -1.61
VPS50-217ENST00000485140 OR5M3Q8NGP4 307 aa4.97□□□□□ -1.61
VPS50-217ENST00000485140 CLIP3Q96DZ5 547 aa4.97□□□□□ -1.61
VPS50-217ENST00000485140 ACAP3Q96P50 834 aa4.97□□□□□ -1.61
VPS50-217ENST00000485140 SLC46A2Q9BY10 475 aa4.97□□□□□ -1.61
VPS50-217ENST00000485140 NRDE2Q9H7Z3 1164 aa4.97□□□□□ -1.61
VPS50-217ENST00000485140 MAGEL2Q9UJ55 1249 aa4.97□□□□□ -1.61
VPS50-217ENST00000485140 PRR5-ARHGAP8B1AHC4 643 aa4.96□□□□□ -1.62
VPS50-217ENST00000485140 DNAJC6O75061 913 aa4.96□□□□□ -1.62
VPS50-217ENST00000485140 PHF2O75151 1096 aa4.96□□□□□ -1.62
VPS50-217ENST00000485140 HLA-DOAP06340 250 aa4.96□□□□□ -1.62
VPS50-217ENST00000485140 CPEP16870 476 aa4.96□□□□□ -1.62
VPS50-217ENST00000485140 STAT3P40763 770 aa4.96□□□□□ -1.62
VPS50-217ENST00000485140 SESN3P58005 492 aa4.96□□□□□ -1.62
VPS50-217ENST00000485140 DGCR2P98153 550 aa4.96□□□□□ -1.62
VPS50-217ENST00000485140 MRPL49Q13405 166 aaKnown RBP4.96□□□□□ -1.62
VPS50-217ENST00000485140 TERF2Q15554 542 aa4.96□□□□□ -1.62
VPS50-217ENST00000485140 LRRC55Q6ZSA7 311 aa4.96□□□□□ -1.62
VPS50-217ENST00000485140 RASSF3Q86WH2 238 aa4.96□□□□□ -1.62
VPS50-217ENST00000485140 USP7Q93009 1102 aa4.96□□□□□ -1.62
VPS50-217ENST00000485140 RAX2Q96IS3 184 aa4.96□□□□□ -1.62
VPS50-217ENST00000485140 CDC5LQ99459 802 aaKnown RBP4.96□□□□□ -1.62
VPS50-217ENST00000485140 CPPED1Q9BRF8 314 aaPredicted RBP4.96□□□□□ -1.62
VPS50-217ENST00000485140 MTFR1LQ9H019 292 aa4.96□□□□□ -1.62
VPS50-217ENST00000485140 ENKD1Q9H0I2 346 aa4.96□□□□□ -1.62
VPS50-217ENST00000485140 TRPS1Q9UHF7 1281 aa4.96□□□□□ -1.62
VPS50-217ENST00000485140 ING1Q9UK53 422 aaPredicted RBP4.96□□□□□ -1.62
VPS50-217ENST00000485140 NOC2LQ9Y3T9 749 aaKnown RBP4.96□□□□□ -1.62
VPS50-217ENST00000485140 A0A0A6YYK5 440 aaPredicted RBP4.95□□□□□ -1.62
VPS50-217ENST00000485140 FKBP9O95302 570 aa4.95□□□□□ -1.62
VPS50-217ENST00000485140 LY86O95711 162 aa4.95□□□□□ -1.62
VPS50-217ENST00000485140 MTHFD2P13995 350 aa4.95□□□□□ -1.62
VPS50-217ENST00000485140 VPS72Q15906 364 aa4.95□□□□□ -1.62
VPS50-217ENST00000485140 PLEKHG4Q58EX7 1191 aa4.95□□□□□ -1.62
VPS50-217ENST00000485140 FNDC7Q5VTL7 733 aa4.95□□□□□ -1.62
VPS50-217ENST00000485140 FKBP9P1Q75LS8 142 aa4.95□□□□□ -1.62
VPS50-217ENST00000485140 CXorf67Q86X51 503 aaPredicted RBP4.95□□□□□ -1.62
VPS50-217ENST00000485140 LDLRAD3Q86YD5 345 aa4.95□□□□□ -1.62
VPS50-217ENST00000485140 ELOA2Q8IYF1 753 aaPredicted RBP4.95□□□□□ -1.62
VPS50-217ENST00000485140 MB21D1Q8N884 522 aa4.95□□□□□ -1.62
VPS50-217ENST00000485140 SLC5A5Q92911 643 aa4.95□□□□□ -1.62
VPS50-217ENST00000485140 SOX7Q9BT81 388 aa4.95□□□□□ -1.62
VPS50-217ENST00000485140 APOBEC2Q9Y235 224 aaKnown RBP4.95□□□□□ -1.62
VPS50-217ENST00000485140 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.94□□□□□ -1.62
VPS50-217ENST00000485140 A0A1W2PR48 441 aa4.94□□□□□ -1.62
VPS50-217ENST00000485140 ZNF891A8MT65 544 aaPredicted RBP4.94□□□□□ -1.62
VPS50-217ENST00000485140 OVOL3O00110 214 aa4.94□□□□□ -1.62
VPS50-217ENST00000485140 FOXN1O15353 648 aa4.94□□□□□ -1.62
VPS50-217ENST00000485140 KDM1AO60341 852 aa4.94□□□□□ -1.62
VPS50-217ENST00000485140 CLSTN1O94985 981 aa4.94□□□□□ -1.62
VPS50-217ENST00000485140 ABHD16AO95870 558 aa4.94□□□□□ -1.62
VPS50-217ENST00000485140 LAG3P18627 525 aa4.94□□□□□ -1.62
VPS50-217ENST00000485140 AVPR1BP47901 424 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms