RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 NECAB3Q96P71 396 aaPredicted RBP13.26□□□□□ -0.29
SYNE1-221ENST00000472563 CSRNP2Q9H175 543 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 IGFLR1Q9H665 355 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 UBN1Q9NPG3 1134 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 TBC1D13Q9NVG8 400 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 KIAA1024Q9UPX6 916 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 A0A1B0GUA9 196 aa13.25□□□□□ -0.29
SYNE1-221ENST00000472563 LRRIQ4A6NIV6 560 aa13.25□□□□□ -0.29
SYNE1-221ENST00000472563 ARF4P18085 180 aaPredicted RBP13.25□□□□□ -0.29
SYNE1-221ENST00000472563 GTF2F1P35269 517 aaKnown RBP eCLIP13.25□□□□□ -0.29
SYNE1-221ENST00000472563 NRIP1P48552 1158 aa13.25□□□□□ -0.29
SYNE1-221ENST00000472563 BCAR1P56945 870 aa13.25□□□□□ -0.29
SYNE1-221ENST00000472563 ARL6IP4Q66PJ3 421 aaKnown RBP13.25□□□□□ -0.29
SYNE1-221ENST00000472563 KCTD17Q8N5Z5 321 aa13.25□□□□□ -0.29
SYNE1-221ENST00000472563 SMG8Q8ND04 991 aaKnown RBP13.25□□□□□ -0.29
SYNE1-221ENST00000472563 URGCPQ8TCY9 931 aa13.25□□□□□ -0.29
SYNE1-221ENST00000472563 PRIMPOLQ96LW4 560 aa13.25□□□□□ -0.29
SYNE1-221ENST00000472563 EIF2AQ9BY44 585 aaKnown RBP13.25□□□□□ -0.29
SYNE1-221ENST00000472563 C2orf40Q9H1Z8 148 aa13.25□□□□□ -0.29
SYNE1-221ENST00000472563 BHMT2Q9H2M3 363 aa13.25□□□□□ -0.29
SYNE1-221ENST00000472563 FZD8Q9H461 694 aa13.25□□□□□ -0.29
SYNE1-221ENST00000472563 TLE6Q9H808 572 aa13.25□□□□□ -0.29
SYNE1-221ENST00000472563 RSAD1Q9HA92 442 aa13.25□□□□□ -0.29
SYNE1-221ENST00000472563 NGRNQ9NPE2 291 aaKnown RBP13.25□□□□□ -0.29
SYNE1-221ENST00000472563 DDX19AQ9NUU7 478 aaKnown RBP13.25□□□□□ -0.29
SYNE1-221ENST00000472563 PRMT7Q9NVM4 692 aaPredicted RBP13.25□□□□□ -0.29
SYNE1-221ENST00000472563 KANSL3Q9P2N6 904 aa13.25□□□□□ -0.29
SYNE1-221ENST00000472563 DNM3Q9UQ16 869 aa13.25□□□□□ -0.29
SYNE1-221ENST00000472563 FAM50BQ9Y247 325 aa13.25□□□□□ -0.29
SYNE1-221ENST00000472563 INPP5FQ9Y2H2 1132 aa13.25□□□□□ -0.29
SYNE1-221ENST00000472563 PCDHGC5Q9Y5F6 944 aa13.25□□□□□ -0.29
SYNE1-221ENST00000472563 FSD2A1L4K1 749 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 PP2D1A8MPX8 630 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 INPPL1O15357 1258 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 LINC01565O15544 149 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 B4GALT5O43286 388 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 EYA4O95677 639 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 ITGA4P13612 1032 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 PDCP20941 246 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 NAMPTP43490 491 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 RNASELQ05823 741 aaKnown RBP13.24□□□□□ -0.29
SYNE1-221ENST00000472563 DLX2Q07687 328 aaPredicted RBP13.24□□□□□ -0.29
SYNE1-221ENST00000472563 PPP2R5AQ15172 486 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 FAM187BQ17R55 369 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 SLC27A1Q6PCB7 646 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 BRAPQ7Z569 592 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 RBM23Q86U06 439 aaKnown RBP13.24□□□□□ -0.29
SYNE1-221ENST00000472563 ZBTB8OSQ8IWT0 167 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 BSNDQ8WZ55 320 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 KIFAP3Q92845 792 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 CPB2Q96IY4 423 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 CDCA3Q99618 268 aaPredicted RBP13.24□□□□□ -0.29
SYNE1-221ENST00000472563 TCF25Q9BQ70 676 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 MMTAG2Q9BU76 263 aaKnown RBP13.24□□□□□ -0.29
SYNE1-221ENST00000472563 NRDE2Q9H7Z3 1164 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 IPPQ9Y573 584 aa13.24□□□□□ -0.29
SYNE1-221ENST00000472563 EVPLQ92817 2033 aa13.23□□□□□ -0.29
SYNE1-221ENST00000472563 ZC3H11AO75152 810 aaKnown RBP eCLIP13.23□□□□□ -0.29
SYNE1-221ENST00000472563 TBX10O75333 385 aa13.23□□□□□ -0.29
SYNE1-221ENST00000472563 GALTP07902 379 aa13.23□□□□□ -0.29
SYNE1-221ENST00000472563 CDC25AP30304 524 aa13.23□□□□□ -0.29
SYNE1-221ENST00000472563 AFF1P51825 1210 aaKnown RBP13.23□□□□□ -0.29
SYNE1-221ENST00000472563 EFNA5P52803 228 aa13.23□□□□□ -0.29
SYNE1-221ENST00000472563 DUSP6Q16828 381 aa13.23□□□□□ -0.29
SYNE1-221ENST00000472563 TMC7Q7Z402 723 aa13.23□□□□□ -0.29
SYNE1-221ENST00000472563 ZNF280BQ86YH2 543 aa13.23□□□□□ -0.29
SYNE1-221ENST00000472563 FAM178BQ8IXR5 827 aa13.23□□□□□ -0.29
SYNE1-221ENST00000472563 HACE1Q8IYU2 909 aa13.23□□□□□ -0.29
SYNE1-221ENST00000472563 DEPTORQ8TB45 409 aa13.23□□□□□ -0.29
SYNE1-221ENST00000472563 TMEM169Q96HH4 297 aa13.23□□□□□ -0.29
SYNE1-221ENST00000472563 INTS4Q96HW7 963 aaKnown RBP13.23□□□□□ -0.29
SYNE1-221ENST00000472563 MSLNLQ96KJ4 702 aa13.23□□□□□ -0.29
SYNE1-221ENST00000472563 IFT74Q96LB3 600 aa13.23□□□□□ -0.29
SYNE1-221ENST00000472563 TRIM6Q9C030 488 aaPredicted RBP13.23□□□□□ -0.29
SYNE1-221ENST00000472563 RNF39Q9H2S5 420 aa13.23□□□□□ -0.29
SYNE1-221ENST00000472563 CLEC1BQ9P126 229 aa13.23□□□□□ -0.29
SYNE1-221ENST00000472563 DAXXQ9UER7 740 aaPredicted RBP13.23□□□□□ -0.29
SYNE1-221ENST00000472563 MUC3AQ02505 3323 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 VWA3AA6NCI4 1184 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 ARL5CA6NH57 179 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 NT5C1B-RDH14C9J2C7 533 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 E9PMD0 336 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 ACKR2O00590 384 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 PER2O15055 1255 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 BMP15O95972 392 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 IL9P15248 144 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 SLC11A1P49279 550 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 NDUFV1P49821 464 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 MAPK6Q16659 721 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 HYIQ5T013 277 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 PLPP4Q5VZY2 271 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 DDX53Q86TM3 631 aaKnown RBP13.22□□□□□ -0.29
SYNE1-221ENST00000472563 TMEM173Q86WV6 379 aaPredicted RBP13.22□□□□□ -0.29
SYNE1-221ENST00000472563 MRPL43Q8N983 215 aaKnown RBP13.22□□□□□ -0.29
SYNE1-221ENST00000472563 IGSF21Q96ID5 467 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 AK8Q96MA6 479 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 TMEM175Q9BSA9 504 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 CCDC113Q9H0I3 377 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 GBP3Q9H0R5 595 aa13.22□□□□□ -0.29
SYNE1-221ENST00000472563 ENTPD7Q9NQZ7 604 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms