RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 ZNF131P52739 623 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 SMTNP53814 917 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 RAD51AP2Q09MP3 1159 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 GIT2Q14161 759 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 BTG3Q14201 252 aaPredicted RBP16.86■□□□□ 0.29
SDC3-203ENST00000471567 RESP18Q5W5W9 173 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 ADALQ6DHV7 355 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 MRPL10Q7Z7H8 261 aaKnown RBP16.86■□□□□ 0.29
SDC3-203ENST00000471567 PDILTQ8N807 584 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 IQUBQ8NA54 791 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 CNNM3Q8NE01 707 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 PGBD4Q96DM1 585 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 REEP2Q9BRK0 252 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 TMEM117Q9H0C3 514 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 KMT5AQ9NQR1 393 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 ARHGAP28Q9P2N2 729 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 RWDD3Q9Y3V2 267 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 H0YCG3 227 aa16.85■□□□□ 0.29
SDC3-203ENST00000471567 B4GALT5O43286 388 aa16.85■□□□□ 0.29
SDC3-203ENST00000471567 FAM13AO94988 1023 aa16.85■□□□□ 0.29
SDC3-203ENST00000471567 ATF7P17544 494 aaPredicted RBP16.85■□□□□ 0.29
SDC3-203ENST00000471567 IBSPP21815 317 aaPredicted RBP16.85■□□□□ 0.29
SDC3-203ENST00000471567 SCP2P22307 547 aa16.85■□□□□ 0.29
SDC3-203ENST00000471567 PRPF4BQ13523 1007 aaKnown RBP16.85■□□□□ 0.29
SDC3-203ENST00000471567 E2F4Q16254 413 aa16.85■□□□□ 0.29
SDC3-203ENST00000471567 UBXN11Q5T124 520 aa16.85■□□□□ 0.29
SDC3-203ENST00000471567 KCNN1Q92952 543 aa16.85■□□□□ 0.29
SDC3-203ENST00000471567 CPB2Q96IY4 423 aa16.85■□□□□ 0.29
SDC3-203ENST00000471567 CHAMP1Q96JM3 812 aa16.85■□□□□ 0.29
SDC3-203ENST00000471567 GUCD1Q96NT3 240 aa16.85■□□□□ 0.29
SDC3-203ENST00000471567 CDX2Q99626 313 aaPredicted RBP16.85■□□□□ 0.29
SDC3-203ENST00000471567 PYM1Q9BRP8 204 aaKnown RBP16.85■□□□□ 0.29
SDC3-203ENST00000471567 KIFC3Q9BVG8 833 aa16.85■□□□□ 0.29
SDC3-203ENST00000471567 LRRC27Q9C0I9 530 aa16.85■□□□□ 0.29
SDC3-203ENST00000471567 PARVGQ9HBI0 331 aa16.85■□□□□ 0.29
SDC3-203ENST00000471567 PCDHB2Q9Y5E7 798 aa16.85■□□□□ 0.29
SDC3-203ENST00000471567 CNTNAP2Q9UHC6 1331 aa16.85■□□□□ 0.29
SDC3-203ENST00000471567 TBKBP1A7MCY6 615 aa16.84■□□□□ 0.29
SDC3-203ENST00000471567 TBCAO75347 108 aaKnown RBP16.84■□□□□ 0.29
SDC3-203ENST00000471567 FGFR1P11362 822 aa16.84■□□□□ 0.29
SDC3-203ENST00000471567 CMA1P23946 247 aa16.84■□□□□ 0.29
SDC3-203ENST00000471567 CACNB1Q02641 598 aaPredicted RBP16.84■□□□□ 0.29
SDC3-203ENST00000471567 SLC27A1Q6PCB7 646 aa16.84■□□□□ 0.29
SDC3-203ENST00000471567 ABI1Q8IZP0 508 aa16.84■□□□□ 0.29
SDC3-203ENST00000471567 RNF169Q8NCN4 708 aa16.84■□□□□ 0.29
SDC3-203ENST00000471567 DDX12PQ92771 950 aa16.84■□□□□ 0.29
SDC3-203ENST00000471567 CLP1Q92989 425 aaKnown RBP16.84■□□□□ 0.29
SDC3-203ENST00000471567 RNF19AQ9NV58 838 aa16.84■□□□□ 0.29
SDC3-203ENST00000471567 MYMKA6NI61 221 aa16.83■□□□□ 0.28
SDC3-203ENST00000471567 N4BP3O15049 544 aa16.83■□□□□ 0.28
SDC3-203ENST00000471567 SLC16A4O15374 487 aa16.83■□□□□ 0.28
SDC3-203ENST00000471567 GATMP50440 423 aa16.83■□□□□ 0.28
SDC3-203ENST00000471567 NCKAP1LP55160 1127 aa16.83■□□□□ 0.28
SDC3-203ENST00000471567 TMEM192Q8IY95 271 aa16.83■□□□□ 0.28
SDC3-203ENST00000471567 MYCT1Q8N699 235 aa16.83■□□□□ 0.28
SDC3-203ENST00000471567 SLC17A8Q8NDX2 589 aa16.83■□□□□ 0.28
SDC3-203ENST00000471567 TMEM161BQ8NDZ6 487 aa16.83■□□□□ 0.28
SDC3-203ENST00000471567 ARNTL2Q8WYA1 636 aa16.83■□□□□ 0.28
SDC3-203ENST00000471567 DHX58Q96C10 678 aa16.83■□□□□ 0.28
SDC3-203ENST00000471567 CASD1Q96PB1 797 aa16.83■□□□□ 0.28
SDC3-203ENST00000471567 TNMDQ9H2S6 317 aa16.83■□□□□ 0.28
SDC3-203ENST00000471567 PRDM12Q9H4Q4 367 aa16.83■□□□□ 0.28
SDC3-203ENST00000471567 MAGEF1Q9HAY2 307 aa16.83■□□□□ 0.28
SDC3-203ENST00000471567 UBN1Q9NPG3 1134 aa16.83■□□□□ 0.28
SDC3-203ENST00000471567 KBTBD4Q9NVX7 518 aa16.83■□□□□ 0.28
SDC3-203ENST00000471567 KCNH3Q9ULD8 1083 aa16.83■□□□□ 0.28
SDC3-203ENST00000471567 POLR2DO15514 142 aaKnown RBP16.82■□□□□ 0.28
SDC3-203ENST00000471567 TRAK2O60296 914 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 RB1P06400 928 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 LINC00271P0C7V0 271 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 MAPTP10636 758 aaKnown RBP16.82■□□□□ 0.28
SDC3-203ENST00000471567 LIG1P18858 919 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 ABCD1P33897 745 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 BMPR1AP36894 532 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 AMPD3Q01432 767 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 TMEM132AQ24JP5 1023 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 PAN2Q504Q3 1202 aaKnown RBP16.82■□□□□ 0.28
SDC3-203ENST00000471567 EPC2Q52LR7 807 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 CLLU1OSQ5K130 101 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 NT5DC1Q5TFE4 455 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 GLB1LQ6UWU2 654 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 DYMQ7RTS9 669 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 HACE1Q8IYU2 909 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 SMG8Q8ND04 991 aaKnown RBP16.82■□□□□ 0.28
SDC3-203ENST00000471567 DNAJC19Q96DA6 116 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 GAS2L1Q99501 681 aaPredicted RBP16.82■□□□□ 0.28
SDC3-203ENST00000471567 ADPGKQ9BRR6 497 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 C17orf80Q9BSJ5 609 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 PLVAPQ9BX97 442 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 EIF2AQ9BY44 585 aaKnown RBP16.82■□□□□ 0.28
SDC3-203ENST00000471567 MRPL4Q9BYD3 311 aaKnown RBP16.82■□□□□ 0.28
SDC3-203ENST00000471567 TRIM6Q9C030 488 aaPredicted RBP16.82■□□□□ 0.28
SDC3-203ENST00000471567 PDZD7Q9H5P4 517 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 CERS4Q9HA82 394 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 SEL1LQ9UBV2 794 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 IPPQ9Y573 584 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 MRPL42Q9Y6G3 142 aaKnown RBP16.82■□□□□ 0.28
SDC3-203ENST00000471567 SZT2Q5T011 3432 aa16.82■□□□□ 0.28
SDC3-203ENST00000471567 MYO9BQ13459 2157 aa16.81■□□□□ 0.28
SDC3-203ENST00000471567 MYH11P35749 1972 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms