RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 A0A0G2JND7 137 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 SGK1O00141 431 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 HIP1RO75146 1068 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 SOX5P35711 763 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 KIAA1755Q5JYT7 1200 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 MEI1Q5TIA1 1274 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 CDC42EP5Q6NZY7 148 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 SCYL2Q6P3W7 929 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 ISLR2Q6UXK2 745 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 AMIGO3Q86WK7 504 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 ACER1Q8TDN7 264 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 CYTH2Q99418 400 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 FAM213AQ9BRX8 229 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 NXF1Q9UBU9 619 aaKnown RBP11.48□□□□□ -0.57
CHD3-208ENST00000470531 TRIM33Q9UPN9 1127 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 BZW2Q9Y6E2 419 aaKnown RBP11.48□□□□□ -0.57
CHD3-208ENST00000470531 GJA3Q9Y6H8 435 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 MYH2Q9UKX2 1941 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 DDTLA6NHG4 134 aaPredicted RBP11.48□□□□□ -0.57
CHD3-208ENST00000470531 RASA4BC9J798 803 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 DNM1LO00429 736 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 KIF3CO14782 793 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 RASA4O43374 803 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 KITP10721 976 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 SKOR1P84550 965 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 CBWD6Q4V339 395 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 GLE1Q53GS7 698 aaKnown RBP11.48□□□□□ -0.57
CHD3-208ENST00000470531 CBWD3Q5JTY5 395 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 CBWD5Q5RIA9 395 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 CYB5D1Q6P9G0 228 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 PADI6Q6TGC4 694 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 RNF207Q6ZRF8 634 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 BARGINQ6ZT62 677 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 PROM2Q8N271 834 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 DTX3LQ8TDB6 740 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 UTRNP46939 3433 aa11.48□□□□□ -0.57
CHD3-208ENST00000470531 SYNJ2BP-COX16A0A087WUM0 186 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 SGPL1O95470 568 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 FMO5P49326 533 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 SMTNP53814 917 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 DLG4P78352 724 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 KDM7AQ6ZMT4 941 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 ZNF564Q8TBZ8 553 aaPredicted RBP11.47□□□□□ -0.57
CHD3-208ENST00000470531 CEP63Q96MT8 703 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 XPO6Q96QU8 1125 aaKnown RBP11.47□□□□□ -0.57
CHD3-208ENST00000470531 VCPKMTQ9H867 229 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 ZWILCHQ9H900 591 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 ARHGEF10LQ9HCE6 1279 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 SAYSD1Q9NPB0 183 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 TYW1Q9NV66 732 aaKnown RBP11.47□□□□□ -0.57
CHD3-208ENST00000470531 COX16Q9P0S2 106 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 RNF14Q9UBS8 474 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 TPX2Q9ULW0 747 aaKnown RBP11.47□□□□□ -0.57
CHD3-208ENST00000470531 MYH6P13533 1939 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 EXOC1LA0A1B0GW35 172 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 SUN1O94901 812 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 FSBPO95073 299 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 CHRNA5P30532 468 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 PSMC4P43686 418 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 NSFP46459 744 aaKnown RBP11.47□□□□□ -0.57
CHD3-208ENST00000470531 ACOT2P49753 483 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 STAT2P52630 851 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 OVGP1Q12889 678 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 GIT2Q14161 759 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 AOC3Q16853 763 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 MTERF2Q49AM1 385 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 IQCKQ8N0W5 287 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 VPS52Q8N1B4 723 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 MCUR1Q96AQ8 359 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 CEP170P1Q96L14 293 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 PITPNM3Q9BZ71 974 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 STMN4Q9H169 189 aaPredicted RBP11.47□□□□□ -0.57
CHD3-208ENST00000470531 ISCUQ9H1K1 167 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 RAVER2Q9HCJ3 691 aaKnown RBP11.47□□□□□ -0.57
CHD3-208ENST00000470531 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.47□□□□□ -0.57
CHD3-208ENST00000470531 CAMTA1Q9Y6Y1 1673 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 LRRD1A4D1F6 860 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 MSH4O15457 936 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 LGR5O75473 907 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 IRX1P78414 480 aaPredicted RBP11.47□□□□□ -0.57
CHD3-208ENST00000470531 KRT17Q04695 432 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 PPATQ06203 517 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 DNAJC3Q13217 504 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 PPP2R5CQ13362 524 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 BBS9Q3SYG4 887 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 CASC4Q6P4E1 433 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 LARGE2Q8N3Y3 721 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 RBM46Q8TBY0 533 aaKnown RBP11.47□□□□□ -0.57
CHD3-208ENST00000470531 PURBQ96QR8 312 aaKnown RBP11.47□□□□□ -0.57
CHD3-208ENST00000470531 ECT2Q9H8V3 914 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 PCSK1NQ9UHG2 260 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 PCDHB4Q9Y5E5 795 aa11.47□□□□□ -0.57
CHD3-208ENST00000470531 E2F8A0AVK6 867 aa11.46□□□□□ -0.57
CHD3-208ENST00000470531 TMEM120BA0PK00 339 aa11.46□□□□□ -0.57
CHD3-208ENST00000470531 IPO5O00410 1097 aaKnown RBP11.46□□□□□ -0.57
CHD3-208ENST00000470531 TXNDC9O14530 226 aa11.46□□□□□ -0.57
CHD3-208ENST00000470531 PPP1R11O60927 126 aaPredicted RBP11.46□□□□□ -0.57
CHD3-208ENST00000470531 AP1G2O75843 785 aa11.46□□□□□ -0.57
CHD3-208ENST00000470531 CREB1P16220 341 aa11.46□□□□□ -0.57
CHD3-208ENST00000470531 MSH2P43246 934 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms