RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 BMT2Q1RMZ1 405 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 FILIP1LQ4L180 1135 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 FAM26DQ5JW98 314 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 FAM26FQ5R3K3 315 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 MARCH8Q5T0T0 291 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 POTEGQ6S5H5 508 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 OTUD6AQ7L8S5 288 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 ZSCAN30Q86W11 494 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 GPBP1Q86WP2 473 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 TPH2Q8IWU9 490 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 KIAA0895Q8NCT3 520 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 TRAPPC12Q8WVT3 735 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 SEPT8Q92599 483 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 GLG1Q92896 1179 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 RAD9AQ99638 391 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 LXNQ9BS40 222 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 C17orf75Q9HAS0 396 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 ERAP1Q9NZ08 941 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 RGL1Q9NZL6 768 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 GDAQ9Y2T3 454 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.97□□□□□ -0.33
USP54-209ENST00000464635 MBLAC1A4D2B0 266 aaPredicted RBP12.97□□□□□ -0.33
USP54-209ENST00000464635 DDX39AO00148 427 aaKnown RBP12.97□□□□□ -0.33
USP54-209ENST00000464635 GNA14O95837 355 aa12.97□□□□□ -0.33
USP54-209ENST00000464635 CCNE2O96020 404 aa12.97□□□□□ -0.33
USP54-209ENST00000464635 SERPINC1P01008 464 aa12.97□□□□□ -0.33
USP54-209ENST00000464635 PSAPP07602 524 aa12.97□□□□□ -0.33
USP54-209ENST00000464635 GHRP10912 638 aa12.97□□□□□ -0.33
USP54-209ENST00000464635 POU3F3P20264 500 aaPredicted RBP12.97□□□□□ -0.33
USP54-209ENST00000464635 SNRPFP62306 86 aaKnown RBP12.97□□□□□ -0.33
USP54-209ENST00000464635 TFF2Q03403 129 aa12.97□□□□□ -0.33
USP54-209ENST00000464635 TPD52L1Q16890 204 aaPredicted RBP12.97□□□□□ -0.33
USP54-209ENST00000464635 EDRF1Q3B7T1 1238 aa12.97□□□□□ -0.33
USP54-209ENST00000464635 STXBP4Q6ZWJ1 553 aa12.97□□□□□ -0.33
USP54-209ENST00000464635 APTXQ7Z2E3 356 aaKnown RBP12.97□□□□□ -0.33
USP54-209ENST00000464635 ZC3H3Q8IXZ2 948 aaKnown RBP12.97□□□□□ -0.33
USP54-209ENST00000464635 DNAJB3Q8WWF6 145 aa12.97□□□□□ -0.33
USP54-209ENST00000464635 IQCDQ96DY2 449 aa12.97□□□□□ -0.33
USP54-209ENST00000464635 ASB2Q96Q27 587 aa12.97□□□□□ -0.33
USP54-209ENST00000464635 XPO4Q9C0E2 1151 aaKnown RBP12.97□□□□□ -0.33
USP54-209ENST00000464635 BHMT2Q9H2M3 363 aa12.97□□□□□ -0.33
USP54-209ENST00000464635 ST6GALNAC4Q9H4F1 302 aa12.97□□□□□ -0.33
USP54-209ENST00000464635 SMARCAD1Q9H4L7 1026 aa12.97□□□□□ -0.33
USP54-209ENST00000464635 IFNKQ9P0W0 207 aa12.97□□□□□ -0.33
USP54-209ENST00000464635 ZKSCAN5Q9Y2L8 839 aa12.97□□□□□ -0.33
USP54-209ENST00000464635 IGKV6D-21A0A0A0MT36 114 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 UPP2O95045 317 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 AMHP03971 560 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 PTMAP06454 111 aaKnown RBP12.96□□□□□ -0.33
USP54-209ENST00000464635 INSRRP14616 1297 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 IDEP14735 1019 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 MARSP56192 900 aaKnown RBP12.96□□□□□ -0.33
USP54-209ENST00000464635 ERVK-21P61565 698 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 HTRA4P83105 476 aaPredicted RBP12.96□□□□□ -0.33
USP54-209ENST00000464635 CTTNQ14247 550 aaKnown RBP12.96□□□□□ -0.33
USP54-209ENST00000464635 MYBPC2Q14324 1141 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 LPIN1Q14693 890 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 PLCB4Q15147 1175 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 SKIV2LQ15477 1246 aaKnown RBP12.96□□□□□ -0.33
USP54-209ENST00000464635 HERC4Q5GLZ8 1057 aaPredicted RBP12.96□□□□□ -0.33
USP54-209ENST00000464635 TCP11X2Q5H9J9 407 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 TAF2Q6P1X5 1199 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 ABHD15Q6UXT9 468 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 EPM2AIP1Q7L775 607 aaPredicted RBP12.96□□□□□ -0.33
USP54-209ENST00000464635 DYMQ7RTS9 669 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 ZNF507Q8TCN5 953 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 ATXN2LQ8WWM7 1075 aaKnown RBP12.96□□□□□ -0.33
USP54-209ENST00000464635 CEP63Q96MT8 703 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 TGS1Q96RS0 853 aaKnown RBP12.96□□□□□ -0.33
USP54-209ENST00000464635 TSG101Q99816 390 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 C17orf80Q9BSJ5 609 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 IFIH1Q9BYX4 1025 aaKnown RBP12.96□□□□□ -0.33
USP54-209ENST00000464635 FAM49AQ9H0Q0 323 aaPredicted RBP12.96□□□□□ -0.33
USP54-209ENST00000464635 SUGCTQ9HAC7 445 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 SAMSN1Q9NSI8 373 aaKnown RBP12.96□□□□□ -0.33
USP54-209ENST00000464635 CGNQ9P2M7 1197 aaKnown RBP12.96□□□□□ -0.33
USP54-209ENST00000464635 CTNND2Q9UQB3 1225 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 TRAF3IP3Q9Y228 551 aa12.96□□□□□ -0.33
USP54-209ENST00000464635 BRWD1Q9NSI6 2320 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 ITIH6Q6UXX5 1313 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 TTC3P53804 2025 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 ESPNB1AK53 854 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 PDXKO00764 312 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 KRT18P05783 430 aaKnown RBP12.95□□□□□ -0.34
USP54-209ENST00000464635 ATP1A3P13637 1013 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 RARRES1P49788 294 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 FKBP3Q00688 224 aaKnown RBP12.95□□□□□ -0.34
USP54-209ENST00000464635 CYP4A11Q02928 519 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 ZCWPW2Q504Y3 356 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 KLHL10Q6JEL2 608 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 MIS18BP1Q6P0N0 1132 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 FILIP1Q7Z7B0 1213 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 RPAINQ86UA6 219 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 VSTM4Q8IW00 320 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 EXOC8Q8IYI6 725 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 SMYD4Q8IYR2 804 aaPredicted RBP12.95□□□□□ -0.34
USP54-209ENST00000464635 SP7Q8TDD2 431 aaPredicted RBP12.95□□□□□ -0.34
USP54-209ENST00000464635 REEP2Q9BRK0 252 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 PARVGQ9HBI0 331 aa12.95□□□□□ -0.34
USP54-209ENST00000464635 RTN4Q9NQC3 1192 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms