RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 ANO5Q75V66 913 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 NOA1Q8NC60 698 aaKnown RBP20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 CEP70Q8NHQ1 597 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 CYFIP2Q96F07 1278 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 RPS6KC1Q96S38 1066 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 NXF1Q9UBU9 619 aaKnown RBP20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 ARHGAP10A1A4S6 786 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 NAB2Q15742 525 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 TAF1BQ53T94 588 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 FAM149B1Q96BN6 582 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 SGSM3Q96HU1 749 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 ZIM3Q96PE6 472 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 ASNSD1Q9NWL6 643 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 ESYT2A0FGR8 921 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 PTGISQ16647 500 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 KDM7AQ6ZMT4 941 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 PRMT1Q99873 361 aaKnown RBP20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 ZWILCHQ9H900 591 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 AGPAT5Q9NUQ2 364 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 MINPP1Q9UNW1 487 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 CEP152O94986 1710 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 INO80B-WBP1J3KQ70 363 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 KRT7P08729 469 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 IZUMO3Q5VZ72 239 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 ATL2Q8NHH9 583 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 ERGIC2Q96RQ1 377 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 INO80BQ9C086 356 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 SNX25Q9H3E2 840 aa20.23■□□□□ 0.83
CCDC88B-204ENST00000463837 K7ERI5 159 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 ITIH2P19823 946 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 HOXA13P31271 388 aaPredicted RBP20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 ANTXR2P58335 489 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 DALRD3Q5D0E6 543 aaKnown RBP20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 STK33Q9BYT3 514 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 CPVLQ9H3G5 476 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 TBC1D22BQ9NU19 505 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 STXBP3O00186 592 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 GNGT2O14610 69 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 TAP1Q03518 808 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 KLC3Q6P597 504 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 ACAD11Q709F0 780 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 DHX38Q92620 1227 aaKnown RBP20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 TMEM260Q9NX78 707 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 TCP11X1B4DZS4 312 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 OATP04181 439 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 KRT17Q04695 432 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 SCARF1Q14162 830 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 NBPF20Q3BBV1 942 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 NEDD1Q8NHV4 660 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 DACT3Q96B18 629 aaPredicted RBP20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 CACYBPQ9HB71 228 aaKnown RBP20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 POLD4Q9HCU8 107 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 NCAPHQ15003 741 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 EDRF1Q3B7T1 1238 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 CCDC124Q96CT7 223 aaKnown RBP20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 SMYD3Q9H7B4 428 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 DBNDD1Q9H9R9 158 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 UVRAGQ9P2Y5 699 aa20.22■□□□□ 0.83
CCDC88B-204ENST00000463837 CDH16O75309 829 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 PRLRP16471 622 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 TRAPPC11Q7Z392 1133 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 ABI1Q8IZP0 508 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 DTNBP1Q96EV8 351 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 MS4A14Q96JA4 679 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 FGD4Q96M96 766 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 PPP1R3GB7ZBB8 358 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 SEPT12Q8IYM1 358 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 IL25Q9H293 177 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 TAC1P20366 129 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 PRDX5P30044 214 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 IGBP1P78318 339 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 MTERF2Q49AM1 385 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 CEP95Q96GE4 821 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 FAM161BQ96MY7 647 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 MYO3AQ8NEV4 1616 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 SERPINB4P48594 390 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 USP38Q8NB14 1042 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 WWP1Q9H0M0 922 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 NUB1Q9Y5A7 615 aa20.21■□□□□ 0.83
CCDC88B-204ENST00000463837 PDIA2Q13087 525 aaKnown RBP20.2■□□□□ 0.83
CCDC88B-204ENST00000463837 RCSD1Q6JBY9 416 aa20.2■□□□□ 0.83
CCDC88B-204ENST00000463837 TRPM8Q7Z2W7 1104 aa20.2■□□□□ 0.83
CCDC88B-204ENST00000463837 EIF2AQ9BY44 585 aaKnown RBP20.2■□□□□ 0.83
CCDC88B-204ENST00000463837 TRIM10Q9UDY6 481 aa20.2■□□□□ 0.83
CCDC88B-204ENST00000463837 TTC7AQ9ULT0 858 aaPredicted RBP20.2■□□□□ 0.83
CCDC88B-204ENST00000463837 GOLGA8MH3BSY2 632 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 EYA4O95677 639 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 MCF2P10911 925 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 KRT10P13645 584 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 IREB2P48200 963 aaKnown RBP20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 GPS1Q13098 491 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 CIAPIN1Q6FI81 312 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 GGT7Q9UJ14 662 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 SLC4A7Q9Y6M7 1214 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 POTEFA5A3E0 1075 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 WDR64B1ANS9 1081 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 POTEIP0CG38 1075 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 POTEGQ6S5H5 508 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 POTEEQ6S8J3 1075 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 CATSPER1Q8NEC5 780 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms