RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 PRIMPOLQ96LW4 560 aa25.45■■□□□ 1.66
PTPN4-208ENST00000460289 MMTAG2Q9BU76 263 aaKnown RBP25.45■■□□□ 1.66
PTPN4-208ENST00000460289 CSRNP2Q9H175 543 aa25.45■■□□□ 1.66
PTPN4-208ENST00000460289 TLR9Q9NR96 1032 aa25.45■■□□□ 1.66
PTPN4-208ENST00000460289 PRMT7Q9NVM4 692 aaPredicted RBP25.45■■□□□ 1.66
PTPN4-208ENST00000460289 KANSL3Q9P2N6 904 aa25.45■■□□□ 1.66
PTPN4-208ENST00000460289 CUL9Q8IWT3 2517 aa25.45■■□□□ 1.66
PTPN4-208ENST00000460289 XIRP2A4UGR9 3374 aa25.45■■□□□ 1.66
PTPN4-208ENST00000460289 VCANP13611 3396 aa25.44■■□□□ 1.66
PTPN4-208ENST00000460289 MEIS3P2A8K0S8 358 aa25.44■■□□□ 1.66
PTPN4-208ENST00000460289 E9PMD0 336 aa25.44■■□□□ 1.66
PTPN4-208ENST00000460289 HYAL1Q12794 435 aa25.44■■□□□ 1.66
PTPN4-208ENST00000460289 CDCA2Q69YH5 1023 aaPredicted RBP25.44■■□□□ 1.66
PTPN4-208ENST00000460289 AGMOQ6ZNB7 445 aa25.44■■□□□ 1.66
PTPN4-208ENST00000460289 EP400NLQ6ZTU2 488 aa25.44■■□□□ 1.66
PTPN4-208ENST00000460289 URGCPQ8TCY9 931 aa25.44■■□□□ 1.66
PTPN4-208ENST00000460289 CPB2Q96IY4 423 aa25.44■■□□□ 1.66
PTPN4-208ENST00000460289 IFT74Q96LB3 600 aa25.44■■□□□ 1.66
PTPN4-208ENST00000460289 TRIM6Q9C030 488 aaPredicted RBP25.44■■□□□ 1.66
PTPN4-208ENST00000460289 NT5C3AQ9H0P0 336 aa25.44■■□□□ 1.66
PTPN4-208ENST00000460289 RSAD1Q9HA92 442 aa25.44■■□□□ 1.66
PTPN4-208ENST00000460289 CLDND1Q9NY35 253 aa25.44■■□□□ 1.66
PTPN4-208ENST00000460289 INPP5FQ9Y2H2 1132 aa25.44■■□□□ 1.66
PTPN4-208ENST00000460289 ITGA4P13612 1032 aa25.43■■□□□ 1.66
PTPN4-208ENST00000460289 ARF4P18085 180 aaPredicted RBP25.43■■□□□ 1.66
PTPN4-208ENST00000460289 SYT1P21579 422 aa25.43■■□□□ 1.66
PTPN4-208ENST00000460289 IRS1P35568 1242 aa25.43■■□□□ 1.66
PTPN4-208ENST00000460289 NAMPTP43490 491 aa25.43■■□□□ 1.66
PTPN4-208ENST00000460289 RNASELQ05823 741 aaKnown RBP25.43■■□□□ 1.66
PTPN4-208ENST00000460289 PUS10Q3MIT2 529 aaKnown RBP25.43■■□□□ 1.66
PTPN4-208ENST00000460289 PPP4R3CPQ6ZMV5 832 aa25.43■■□□□ 1.66
PTPN4-208ENST00000460289 HACE1Q8IYU2 909 aa25.43■■□□□ 1.66
PTPN4-208ENST00000460289 DEPTORQ8TB45 409 aa25.43■■□□□ 1.66
PTPN4-208ENST00000460289 AK8Q96MA6 479 aa25.43■■□□□ 1.66
PTPN4-208ENST00000460289 FZD8Q9H461 694 aa25.43■■□□□ 1.66
PTPN4-208ENST00000460289 IGFLR1Q9H665 355 aa25.43■■□□□ 1.66
PTPN4-208ENST00000460289 TBC1D13Q9NVG8 400 aa25.43■■□□□ 1.66
PTPN4-208ENST00000460289 IPPQ9Y573 584 aa25.43■■□□□ 1.66
PTPN4-208ENST00000460289 SPTBN5Q9NRC6 3674 aaKnown RBP25.43■■□□□ 1.66
PTPN4-208ENST00000460289 MYO7AQ13402 2215 aa25.43■■□□□ 1.66
PTPN4-208ENST00000460289 A0A1B0GUA9 196 aa25.42■■□□□ 1.66
PTPN4-208ENST00000460289 BCAR1P56945 870 aa25.42■■□□□ 1.66
PTPN4-208ENST00000460289 ZRSR1Q15695 479 aaKnown RBP25.42■■□□□ 1.66
PTPN4-208ENST00000460289 FAM187BQ17R55 369 aa25.42■■□□□ 1.66
PTPN4-208ENST00000460289 CTC1Q2NKJ3 1217 aa25.42■■□□□ 1.66
PTPN4-208ENST00000460289 HYIQ5T013 277 aa25.42■■□□□ 1.66
PTPN4-208ENST00000460289 SLC27A1Q6PCB7 646 aa25.42■■□□□ 1.66
PTPN4-208ENST00000460289 SLC39A11Q8N1S5 342 aa25.42■■□□□ 1.66
PTPN4-208ENST00000460289 SMG8Q8ND04 991 aaKnown RBP25.42■■□□□ 1.66
PTPN4-208ENST00000460289 SNX21Q969T3 373 aa25.42■■□□□ 1.66
PTPN4-208ENST00000460289 CDK5RAP3Q96JB5 506 aa25.42■■□□□ 1.66
PTPN4-208ENST00000460289 UHRF1Q96T88 793 aaPredicted RBP25.42■■□□□ 1.66
PTPN4-208ENST00000460289 EIF2AQ9BY44 585 aaKnown RBP25.42■■□□□ 1.66
PTPN4-208ENST00000460289 B4GALT5O43286 388 aa25.41■■□□□ 1.66
PTPN4-208ENST00000460289 SLC26A4O43511 780 aa25.41■■□□□ 1.66
PTPN4-208ENST00000460289 ZC3H11AO75152 810 aaKnown RBP eCLIP25.41■■□□□ 1.66
PTPN4-208ENST00000460289 PBX3P40426 434 aa25.41■■□□□ 1.66
PTPN4-208ENST00000460289 EFNA5P52803 228 aa25.41■■□□□ 1.66
PTPN4-208ENST00000460289 ERVFC1P60507 584 aa25.41■■□□□ 1.66
PTPN4-208ENST00000460289 MAPK6Q16659 721 aa25.41■■□□□ 1.66
PTPN4-208ENST00000460289 BSNDQ8WZ55 320 aa25.41■■□□□ 1.66
PTPN4-208ENST00000460289 NGRNQ9NPE2 291 aaKnown RBP25.41■■□□□ 1.66
PTPN4-208ENST00000460289 DAXXQ9UER7 740 aaPredicted RBP25.41■■□□□ 1.66
PTPN4-208ENST00000460289 SF3A1Q15459 793 aaKnown RBP25.4■■□□□ 1.66
PTPN4-208ENST00000460289 TMEM169Q96HH4 297 aa25.4■■□□□ 1.66
PTPN4-208ENST00000460289 FAM193BQ96PV7 902 aaPredicted RBP25.4■■□□□ 1.66
PTPN4-208ENST00000460289 NRDE2Q9H7Z3 1164 aa25.4■■□□□ 1.66
PTPN4-208ENST00000460289 TLE6Q9H808 572 aa25.4■■□□□ 1.66
PTPN4-208ENST00000460289 BRWD1Q9NSI6 2320 aa25.4■■□□□ 1.66
PTPN4-208ENST00000460289 FSD2A1L4K1 749 aa25.39■■□□□ 1.66
PTPN4-208ENST00000460289 FSCN2O14926 492 aa25.39■■□□□ 1.66
PTPN4-208ENST00000460289 UBA7P41226 1012 aa25.39■■□□□ 1.66
PTPN4-208ENST00000460289 NRIP1P48552 1158 aa25.39■■□□□ 1.66
PTPN4-208ENST00000460289 ADAM15Q13444 863 aa25.39■■□□□ 1.66
PTPN4-208ENST00000460289 PRPF4BQ13523 1007 aaKnown RBP25.39■■□□□ 1.66
PTPN4-208ENST00000460289 BMS1Q14692 1282 aaKnown RBP25.39■■□□□ 1.66
PTPN4-208ENST00000460289 RINT1Q6NUQ1 792 aa25.39■■□□□ 1.66
PTPN4-208ENST00000460289 ADGRD2Q7Z7M1 963 aa25.39■■□□□ 1.66
PTPN4-208ENST00000460289 GADD45GIP1Q8TAE8 222 aaPredicted RBP25.39■■□□□ 1.66
PTPN4-208ENST00000460289 DRC1Q96MC2 740 aa25.39■■□□□ 1.66
PTPN4-208ENST00000460289 TCF25Q9BQ70 676 aa25.39■■□□□ 1.66
PTPN4-208ENST00000460289 TIPINQ9BVW5 301 aa25.39■■□□□ 1.66
PTPN4-208ENST00000460289 POLD4Q9HCU8 107 aa25.39■■□□□ 1.66
PTPN4-208ENST00000460289 NT5C1B-RDH14C9J2C7 533 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 H3BQ06 376 aaPredicted RBP25.38■■□□□ 1.65
PTPN4-208ENST00000460289 TNFRSF10AO00220 468 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 ACKR2O00590 384 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 GALTP07902 379 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 GTF2F1P35269 517 aaKnown RBP eCLIP25.38■■□□□ 1.65
PTPN4-208ENST00000460289 LONP1P36776 959 aaKnown RBP25.38■■□□□ 1.65
PTPN4-208ENST00000460289 LTBRP36941 435 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 TMEM132AQ24JP5 1023 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 PTCRAQ6ISU1 281 aaPredicted RBP25.38■■□□□ 1.65
PTPN4-208ENST00000460289 C1orf186Q6ZWK4 172 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 TMC7Q7Z402 723 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 KCNK18Q7Z418 384 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 RBM23Q86U06 439 aaKnown RBP25.38■■□□□ 1.65
PTPN4-208ENST00000460289 CABP7Q86V35 215 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 EFHBQ8N7U6 833 aa25.38■■□□□ 1.65
PTPN4-208ENST00000460289 PNMA5Q96PV4 448 aa25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms