RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 COBLL1Q53SF7 1204 aa16.62■□□□□ 0.25
LMNB1-203ENST00000460265 SH2D3CQ8N5H7 860 aa16.62■□□□□ 0.25
LMNB1-203ENST00000460265 XXYLT1Q8NBI6 393 aa16.62■□□□□ 0.25
LMNB1-203ENST00000460265 DDX60LQ5H9U9 1706 aaKnown RBP16.62■□□□□ 0.25
LMNB1-203ENST00000460265 LRRIQ4A6NIV6 560 aa16.62■□□□□ 0.25
LMNB1-203ENST00000460265 HNRNPH3P31942 346 aaKnown RBP16.62■□□□□ 0.25
LMNB1-203ENST00000460265 HOXD13P35453 343 aa16.62■□□□□ 0.25
LMNB1-203ENST00000460265 DLG4P78352 724 aa16.62■□□□□ 0.25
LMNB1-203ENST00000460265 ANGEL2Q5VTE6 544 aaKnown RBP16.62■□□□□ 0.25
LMNB1-203ENST00000460265 C7orf43Q8WVR3 580 aa16.62■□□□□ 0.25
LMNB1-203ENST00000460265 FGGP02679 453 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 PAK2Q13177 524 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 CCDC25Q86WR0 208 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 SYTL5Q8TDW5 730 aaPredicted RBP16.61■□□□□ 0.25
LMNB1-203ENST00000460265 ARL8AQ96BM9 186 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 TBC1D31Q96DN5 1066 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 SH3GL3Q99963 347 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 ANKFY1Q9P2R3 1169 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 PEX10O60683 326 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 VCAM1P19320 739 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 SOX5P35711 763 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 BFSP1Q12934 665 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 EPC2Q52LR7 807 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 ARHGAP27Q6ZUM4 889 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 CCDC50Q8IVM0 306 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 RBM46Q8TBY0 533 aaKnown RBP16.61■□□□□ 0.25
LMNB1-203ENST00000460265 SLC5A5Q92911 643 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 IFT74Q96LB3 600 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 RANBP17Q9H2T7 1088 aaKnown RBP16.61■□□□□ 0.25
LMNB1-203ENST00000460265 AMACRQ9UHK6 382 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 GUCY1A3Q02108 690 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 WLSQ5T9L3 541 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 GANQ9H2C0 597 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 MYH7BA7E2Y1 1941 aa16.61■□□□□ 0.25
LMNB1-203ENST00000460265 GRID2IPA4D2P6 1211 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 ATMINO43313 823 aaPredicted RBP16.6■□□□□ 0.25
LMNB1-203ENST00000460265 CYP3A4P08684 503 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 C11orf91Q3C1V1 193 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 AGBL3Q8NEM8 1001 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 TMEM206Q9H813 350 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.6■□□□□ 0.25
LMNB1-203ENST00000460265 KLHL33A6NCF5 533 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 ENO4A6NNW6 628 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 WDR46O15213 610 aaKnown RBP16.6■□□□□ 0.25
LMNB1-203ENST00000460265 GLI1P08151 1106 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 NR3C2P08235 984 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 LMNB1P20700 586 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 SEC24CP53992 1094 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 TRADDQ15628 312 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 DCAF15Q66K64 600 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 POTEAQ6S8J7 498 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 OTUD6AQ7L8S5 288 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 SLC35G2Q8TBE7 412 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 OLFML3Q9NRN5 406 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 IRAK4Q9NWZ3 460 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 HSPBP1Q9NZL4 362 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 AJAP1Q9UKB5 411 aaPredicted RBP16.6■□□□□ 0.25
LMNB1-203ENST00000460265 WDR64B1ANS9 1081 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 E7EVH7 732 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 KIF4AO95239 1232 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 KRT14P02533 472 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 FTLP02792 175 aaPredicted RBP16.6■□□□□ 0.25
LMNB1-203ENST00000460265 AIPL1Q9NZN9 384 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 SEL1LQ9UBV2 794 aa16.6■□□□□ 0.25
LMNB1-203ENST00000460265 ZC3H4Q9UPT8 1303 aaKnown RBP16.59■□□□□ 0.25
LMNB1-203ENST00000460265 GOLGA6L10A0A0M3HER8 536 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 PIK3CDO00329 1044 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 CYP26A1O43174 497 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 EPHB4P54760 987 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 CYB5D1Q6P9G0 228 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 IRF2BP2Q7Z5L9 587 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 CBWD2Q8IUF1 395 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 KAT5Q92993 513 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 RIT2Q99578 217 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 SH3GL2Q99962 352 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 FAM213AQ9BRX8 229 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 PI4K2AQ9BTU6 479 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 APEX2Q9UBZ4 518 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 EXOC7Q9UPT5 735 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 LAMB1P07942 1786 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 NHSQ6T4R5 1651 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 PGRMC1O00264 195 aaKnown RBP16.59■□□□□ 0.25
LMNB1-203ENST00000460265 RARRES1P49788 294 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 POLGP54098 1239 aaPredicted RBP16.59■□□□□ 0.25
LMNB1-203ENST00000460265 PPP2R5CQ13362 524 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 NNTQ13423 1086 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 NCAPG2Q86XI2 1143 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 SYCE1Q8N0S2 351 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 ZSWIM2Q8NEG5 633 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 ZNF483Q8TF39 744 aaPredicted RBP16.59■□□□□ 0.25
LMNB1-203ENST00000460265 TBC1D22BQ9NU19 505 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 BAIAP2L1Q9UHR4 511 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 RIPK3Q9Y572 518 aa16.59■□□□□ 0.25
LMNB1-203ENST00000460265 DDX3XO00571 662 aaKnown RBP eCLIP16.58■□□□□ 0.258e-31■■■□□ 15.3
LMNB1-203ENST00000460265 NPM3O75607 178 aaKnown RBP16.58■□□□□ 0.25
LMNB1-203ENST00000460265 SLC8A1P32418 973 aa16.58■□□□□ 0.25
LMNB1-203ENST00000460265 LIG4P49917 911 aa16.58■□□□□ 0.25
LMNB1-203ENST00000460265 C2CD6Q53TS8 623 aa16.58■□□□□ 0.25
LMNB1-203ENST00000460265 INTS8Q75QN2 995 aaKnown RBP16.58■□□□□ 0.25
LMNB1-203ENST00000460265 RPUSD2Q8IZ73 545 aaKnown RBP16.58■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms