RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ZNF598Q86UK7 904 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 DGKHQ86XP1 1220 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 CNTD1Q8N815 330 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 SLC7A14Q8TBB6 771 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 WHAMMQ8TF30 809 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 DDX1Q92499 740 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 RABEP2Q9H5N1 569 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 PHAXQ9H814 394 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 HOMER3Q9NSC5 361 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 ATP8A2Q9NTI2 1148 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 SUCOQ9UBS9 1254 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 APEX2Q9UBZ4 518 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 CTNNA3Q9UI47 895 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 ITGB1BP2Q9UKP3 347 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 TNKSO95271 1327 aa5.27□□□□□ -1.57
CCDC88A-209ENST00000456975 BLACEA4D250 179 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 VSTM5A8MXK1 200 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 LACTBL1A8MY62 500 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 H0YC42 278 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 MCF2LO15068 1137 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 LSM1O15116 133 aaKnown RBP5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 TTI1O43156 1089 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 GPR39O43194 453 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 BNIP3LO60238 219 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 DIAPH2O60879 1101 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 CPDO75976 1380 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 MBD4O95243 580 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 CYP17A1P05093 508 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 FAM157BP0CG42 384 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 ZSCAN22P10073 491 aaPredicted RBP5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 CTNNA1P35221 906 aaKnown RBP5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 SLC16A2P36021 539 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 TPD52P55327 224 aaPredicted RBP5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 RRP1P56182 461 aaKnown RBP5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 IKQ13123 557 aaPredicted RBP5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 TRIM28Q13263 835 aaKnown RBP5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 ANKRD1Q15327 319 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 LRRFIP1Q32MZ4 808 aaKnown RBP5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 CAVIN4Q5BKX8 364 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 IL31Q6EBC2 164 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 THOC7Q6I9Y2 204 aaKnown RBP5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 TMCO3Q6UWJ1 677 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 INTS8Q75QN2 995 aaKnown RBP5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 ZBTB46Q86UZ6 589 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 SPATA2LQ8IUW3 424 aaPredicted RBP5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 TXLNBQ8N3L3 684 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 AFAP1L1Q8TED9 768 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 ARHGAP45Q92619 1136 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 ABHD17AQ96GS6 310 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 CCDC114Q96M63 670 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 CCDC7Q96M83 1385 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 COG8Q96MW5 612 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 EIF2AK1Q9BQI3 630 aaKnown RBP5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 RHOBTB2Q9BYZ6 727 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 VCPKMTQ9H867 229 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 KIF9Q9HAQ2 790 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 ATP6V0A4Q9HBG4 840 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 NDFIP2Q9NV92 336 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 LRP2BPQ9P2M1 347 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 NDOR1Q9UHB4 597 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 ZNF510Q9Y2H8 683 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 PCDHGC5Q9Y5F6 944 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 CSADQ9Y600 493 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 SLC4A4Q9Y6R1 1079 aa5.26□□□□□ -1.57
CCDC88A-209ENST00000456975 PRAMEF27A3QJZ7 478 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 TSPY2A6NKD2 308 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 NCAM2O15394 837 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 XPOTO43592 962 aaKnown RBP5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 TSPAN1O60635 241 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 GCP02774 474 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 EPHX1P07099 455 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 TSPY3P0CV98 308 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 TSPY8P0CW00 308 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 ESRRAP11474 423 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 SLC5A1P13866 664 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 ALOX15P16050 662 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 NR2C2P49116 596 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 CD83Q01151 205 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 TSPY1Q01534 308 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 PDE1CQ14123 709 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 MORC3Q14149 939 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 UBAP2LQ14157 1087 aaKnown RBP5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 SPATA1Q5VX52 437 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 BTNL9Q6UXG8 535 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 LRRC31Q6UY01 552 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 NCCRP1Q6ZVX7 275 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 NME9Q86XW9 330 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 RAB11FIP4Q86YS3 637 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 CTCFLQ8NI51 663 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 GCC1Q96CN9 775 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 FGD4Q96M96 766 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 TRIM4Q9C037 500 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 NSRP1Q9H0G5 558 aaKnown RBP5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 SLC52A2Q9HAB3 445 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 TRIM39Q9HCM9 518 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 SIRT5Q9NXA8 310 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 IL20Q9NYY1 176 aa5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-209ENST00000456975 MARK1Q9P0L2 795 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms