RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 AMFRQ9UKV5 643 aa16.33■□□□□ 0.2
LDLR-202ENST00000455727 TMEM150BA6NC51 233 aa16.32■□□□□ 0.2
LDLR-202ENST00000455727 TMCO5BA8MYB1 307 aa16.32■□□□□ 0.2
LDLR-202ENST00000455727 GCLMP48507 274 aa16.32■□□□□ 0.2
LDLR-202ENST00000455727 CARSP49589 748 aaKnown RBP16.32■□□□□ 0.2
LDLR-202ENST00000455727 MREGQ8N565 214 aa16.32■□□□□ 0.2
LDLR-202ENST00000455727 NSUN6Q8TEA1 469 aaKnown RBP16.32■□□□□ 0.2
LDLR-202ENST00000455727 AFAP1L1Q8TED9 768 aa16.32■□□□□ 0.2
LDLR-202ENST00000455727 OPA1O60313 960 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 NPTX2P47972 431 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 DMP1Q13316 513 aaPredicted RBP16.31■□□□□ 0.2
LDLR-202ENST00000455727 PLA2G4FQ68DD2 849 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 PLEKHO2Q8TD55 490 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 WHAMMQ8TF30 809 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 ATP6V0A1Q93050 837 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 CDHR1Q96JP9 859 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 SH2D3AQ9BRG2 576 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 TMEM117Q9H0C3 514 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 ZNF214Q9UL59 606 aaPredicted RBP16.31■□□□□ 0.2
LDLR-202ENST00000455727 NFASCO94856 1347 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 BHMG1C9JSJ3 638 aaPredicted RBP16.31■□□□□ 0.2
LDLR-202ENST00000455727 RAD51CO43502 376 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 BUB1BO60566 1050 aaPredicted RBP16.31■□□□□ 0.2
LDLR-202ENST00000455727 RPS6KA5O75582 802 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 STAM2O75886 525 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 ACTN2P35609 894 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 MXI1P50539 228 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 RNASE9P60153 205 aaKnown RBP16.31■□□□□ 0.2
LDLR-202ENST00000455727 ENPEPQ07075 957 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 SNRNP48Q6IEG0 339 aaKnown RBP16.31■□□□□ 0.2
LDLR-202ENST00000455727 APOBEC3FQ8IUX4 373 aaKnown RBP16.31■□□□□ 0.2
LDLR-202ENST00000455727 ARHGEF19Q8IW93 802 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 RHOT2Q8IXI1 618 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 ISCUQ9H1K1 167 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 OSGEPQ9NPF4 335 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 NFU1Q9UMS0 254 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 COQ4Q9Y3A0 265 aa16.31■□□□□ 0.2
LDLR-202ENST00000455727 NOC2LQ9Y3T9 749 aaKnown RBP16.31■□□□□ 0.2
LDLR-202ENST00000455727 GOLGA8KD6RF30 607 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 LRRN2O75325 713 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 STBD1O95210 358 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 KCNA2P16389 499 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 CNGA1P29973 690 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 ADSSP30520 456 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 RTP1P59025 263 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 SNRNP35Q16560 246 aaKnown RBP16.3■□□□□ 0.2
LDLR-202ENST00000455727 CASKIN2Q8WXE0 1202 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 RIN2Q8WYP3 895 aaPredicted RBP16.3■□□□□ 0.2
LDLR-202ENST00000455727 ZKSCAN4Q969J2 545 aaPredicted RBP16.3■□□□□ 0.2
LDLR-202ENST00000455727 WRNIP1Q96S55 665 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 CCDC169A6NNP5 214 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 HSF2BPO75031 334 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 ZBTB7AO95365 584 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 CAPN2P17655 700 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 FAM71AQ8IYT1 594 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 TSEN2Q8NCE0 465 aaKnown RBP16.3■□□□□ 0.2
LDLR-202ENST00000455727 ZSWIM2Q8NEG5 633 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 TMC2Q8TDI7 906 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 ZBTB9Q96C00 473 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 FBXL18Q96ME1 805 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 KMT5AQ9NQR1 393 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 PDLIM7Q9NR12 457 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 GJA3Q9Y6H8 435 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 PFASO15067 1338 aa16.3■□□□□ 0.2
LDLR-202ENST00000455727 ANKRD63C9JTQ0 380 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 ADRB2P07550 413 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 PSAPP07602 524 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 GTF2H1P32780 548 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 ABCD1P33897 745 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 HNRNPH2P55795 449 aaKnown RBP16.29■□□□□ 0.2
LDLR-202ENST00000455727 PPFIA1Q13136 1202 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 CUL1Q13616 776 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 KLHL7Q8IXQ5 586 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 IQCKQ8N0W5 287 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 MCPH1Q8NEM0 835 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 IFT81Q8WYA0 676 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 THAP2Q9H0W7 228 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 TAF1DQ9H5J8 278 aaPredicted RBP16.29■□□□□ 0.2
LDLR-202ENST00000455727 SLITRK6Q9H5Y7 841 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 GABBR1Q9UBS5 961 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 IGSF9BQ9UPX0 1349 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 DENND3A2RUS2 1198 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 ZSCAN5CA6NGD5 496 aaPredicted RBP16.29■□□□□ 0.2
LDLR-202ENST00000455727 SART1O43290 800 aaKnown RBP16.29■□□□□ 0.2
LDLR-202ENST00000455727 ZNF862O60290 1169 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 RGS20O76081 388 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 ABCB4P21439 1286 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 HMGCS2P54868 508 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 CLUL1Q15846 466 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 KRT39Q6A163 491 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 CATSPERGQ6ZRH7 1159 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 USP37Q86T82 979 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 PARD3BQ8TEW8 1205 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 ARHGEF26Q96DR7 871 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 CEP170P1Q96L14 293 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 MFSD14AQ96MC6 490 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 TEX13BQ9BXU2 312 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 MTFR1LQ9H019 292 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 CARD9Q9H257 536 aa16.29■□□□□ 0.2
LDLR-202ENST00000455727 TMEM8AQ9HCN3 771 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms