RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 SLC39A11Q8N1S5 342 aa23.54■■□□□ 1.36
HMGB3-205ENST00000455596 SNX29Q8TEQ0 813 aa23.54■■□□□ 1.36
HMGB3-205ENST00000455596 CCDC51Q96ER9 411 aa23.54■■□□□ 1.36
HMGB3-205ENST00000455596 RSAD1Q9HA92 442 aa23.54■■□□□ 1.36
HMGB3-205ENST00000455596 FAM50BQ9Y247 325 aa23.54■■□□□ 1.36
HMGB3-205ENST00000455596 CNTNAP2Q9UHC6 1331 aa23.54■■□□□ 1.36
HMGB3-205ENST00000455596 MYH11P35749 1972 aa23.53■■□□□ 1.36
HMGB3-205ENST00000455596 CARNS1A5YM72 827 aa23.53■■□□□ 1.36
HMGB3-205ENST00000455596 LRRIQ4A6NIV6 560 aa23.53■■□□□ 1.36
HMGB3-205ENST00000455596 FSCN2O14926 492 aa23.53■■□□□ 1.36
HMGB3-205ENST00000455596 LINC01565O15544 149 aa23.53■■□□□ 1.36
HMGB3-205ENST00000455596 ZC3H11AO75152 810 aaKnown RBP eCLIP23.53■■□□□ 1.36
HMGB3-205ENST00000455596 NCLP19338 710 aaKnown RBP23.53■■□□□ 1.36
HMGB3-205ENST00000455596 RNASELQ05823 741 aaKnown RBP23.53■■□□□ 1.36
HMGB3-205ENST00000455596 DLX2Q07687 328 aaPredicted RBP23.53■■□□□ 1.36
HMGB3-205ENST00000455596 ECM1Q16610 540 aa23.53■■□□□ 1.36
HMGB3-205ENST00000455596 DTHD1Q6ZMT9 781 aa23.53■■□□□ 1.36
HMGB3-205ENST00000455596 EFHBQ8N7U6 833 aa23.53■■□□□ 1.36
HMGB3-205ENST00000455596 URGCPQ8TCY9 931 aa23.53■■□□□ 1.36
HMGB3-205ENST00000455596 CPB2Q96IY4 423 aa23.53■■□□□ 1.36
HMGB3-205ENST00000455596 TLE6Q9H808 572 aa23.53■■□□□ 1.36
HMGB3-205ENST00000455596 TBC1D13Q9NVG8 400 aa23.53■■□□□ 1.36
HMGB3-205ENST00000455596 TBX10O75333 385 aa23.52■■□□□ 1.36
HMGB3-205ENST00000455596 CYP11B2P19099 503 aa23.52■■□□□ 1.36
HMGB3-205ENST00000455596 NDUFV1P49821 464 aa23.52■■□□□ 1.36
HMGB3-205ENST00000455596 AMHR2Q16671 573 aa23.52■■□□□ 1.36
HMGB3-205ENST00000455596 PLPP4Q5VZY2 271 aa23.52■■□□□ 1.36
HMGB3-205ENST00000455596 LARP1BQ659C4 914 aaKnown RBP23.52■■□□□ 1.36
HMGB3-205ENST00000455596 TCF25Q9BQ70 676 aa23.52■■□□□ 1.36
HMGB3-205ENST00000455596 BACH2Q9BYV9 841 aa23.52■■□□□ 1.36
HMGB3-205ENST00000455596 CSRNP2Q9H175 543 aa23.52■■□□□ 1.36
HMGB3-205ENST00000455596 NRDE2Q9H7Z3 1164 aa23.52■■□□□ 1.36
HMGB3-205ENST00000455596 ENTPD7Q9NQZ7 604 aa23.52■■□□□ 1.36
HMGB3-205ENST00000455596 DDX19AQ9NUU7 478 aaKnown RBP23.52■■□□□ 1.36
HMGB3-205ENST00000455596 KIAA1024Q9UPX6 916 aa23.52■■□□□ 1.36
HMGB3-205ENST00000455596 FSD2A1L4K1 749 aa23.51■■□□□ 1.35
HMGB3-205ENST00000455596 NT5C1B-RDH14C9J2C7 533 aa23.51■■□□□ 1.35
HMGB3-205ENST00000455596 ITGA4P13612 1032 aa23.51■■□□□ 1.35
HMGB3-205ENST00000455596 ARF4P18085 180 aaPredicted RBP23.51■■□□□ 1.35
HMGB3-205ENST00000455596 KRT79Q5XKE5 535 aa23.51■■□□□ 1.35
HMGB3-205ENST00000455596 ZBTB8OSQ8IWT0 167 aa23.51■■□□□ 1.35
HMGB3-205ENST00000455596 FAM178BQ8IXR5 827 aa23.51■■□□□ 1.35
HMGB3-205ENST00000455596 SMG8Q8ND04 991 aaKnown RBP23.51■■□□□ 1.35
HMGB3-205ENST00000455596 CDCA3Q99618 268 aaPredicted RBP23.51■■□□□ 1.35
HMGB3-205ENST00000455596 EIF2AQ9BY44 585 aaKnown RBP23.51■■□□□ 1.35
HMGB3-205ENST00000455596 BHMT2Q9H2M3 363 aa23.51■■□□□ 1.35
HMGB3-205ENST00000455596 NGRNQ9NPE2 291 aaKnown RBP23.51■■□□□ 1.35
HMGB3-205ENST00000455596 UBN1Q9NPG3 1134 aa23.51■■□□□ 1.35
HMGB3-205ENST00000455596 KANSL3Q9P2N6 904 aa23.51■■□□□ 1.35
HMGB3-205ENST00000455596 IPPQ9Y573 584 aa23.51■■□□□ 1.35
HMGB3-205ENST00000455596 SPTBN5Q9NRC6 3674 aaKnown RBP23.51■■□□□ 1.35
HMGB3-205ENST00000455596 ATP2C1P98194 919 aaPredicted RBP23.5■■□□□ 1.35
HMGB3-205ENST00000455596 CLUL1Q15846 466 aa23.5■■□□□ 1.35
HMGB3-205ENST00000455596 IL17AQ16552 155 aa23.5■■□□□ 1.35
HMGB3-205ENST00000455596 DUSP6Q16828 381 aa23.5■■□□□ 1.35
HMGB3-205ENST00000455596 TMC7Q7Z402 723 aa23.5■■□□□ 1.35
HMGB3-205ENST00000455596 TMEM169Q96HH4 297 aa23.5■■□□□ 1.35
HMGB3-205ENST00000455596 TRIM6Q9C030 488 aaPredicted RBP23.5■■□□□ 1.35
HMGB3-205ENST00000455596 GBP3Q9H0R5 595 aa23.5■■□□□ 1.35
HMGB3-205ENST00000455596 CD207Q9UJ71 328 aa23.5■■□□□ 1.35
HMGB3-205ENST00000455596 TTC28Q96AY4 2481 aa23.49■■□□□ 1.35
HMGB3-205ENST00000455596 PP2D1A8MPX8 630 aa23.49■■□□□ 1.35
HMGB3-205ENST00000455596 PER2O15055 1255 aa23.49■■□□□ 1.35
HMGB3-205ENST00000455596 CUL4AQ13619 759 aa23.49■■□□□ 1.35
HMGB3-205ENST00000455596 PPP2R5AQ15172 486 aa23.49■■□□□ 1.35
HMGB3-205ENST00000455596 CDCA2Q69YH5 1023 aaPredicted RBP23.49■■□□□ 1.35
HMGB3-205ENST00000455596 PRIMPOLQ96LW4 560 aa23.49■■□□□ 1.35
HMGB3-205ENST00000455596 FAM193BQ96PV7 902 aaPredicted RBP23.49■■□□□ 1.35
HMGB3-205ENST00000455596 C2orf40Q9H1Z8 148 aa23.49■■□□□ 1.35
HMGB3-205ENST00000455596 PRMT7Q9NVM4 692 aaPredicted RBP23.49■■□□□ 1.35
HMGB3-205ENST00000455596 B4GALT5O43286 388 aa23.48■■□□□ 1.35
HMGB3-205ENST00000455596 MBTPS2O43462 519 aa23.48■■□□□ 1.35
HMGB3-205ENST00000455596 GLP2RO95838 553 aa23.48■■□□□ 1.35
HMGB3-205ENST00000455596 GALTP07902 379 aa23.48■■□□□ 1.35
HMGB3-205ENST00000455596 NAMPTP43490 491 aa23.48■■□□□ 1.35
HMGB3-205ENST00000455596 BMS1Q14692 1282 aaKnown RBP23.48■■□□□ 1.35
HMGB3-205ENST00000455596 SLC27A1Q6PCB7 646 aa23.48■■□□□ 1.35
HMGB3-205ENST00000455596 PPP4R3CPQ6ZMV5 832 aa23.48■■□□□ 1.35
HMGB3-205ENST00000455596 HACE1Q8IYU2 909 aa23.48■■□□□ 1.35
HMGB3-205ENST00000455596 BSNDQ8WZ55 320 aa23.48■■□□□ 1.35
HMGB3-205ENST00000455596 CLEC1BQ9P126 229 aa23.48■■□□□ 1.35
HMGB3-205ENST00000455596 DNAJB4Q9UDY4 337 aa23.48■■□□□ 1.35
HMGB3-205ENST00000455596 DNM3Q9UQ16 869 aa23.48■■□□□ 1.35
HMGB3-205ENST00000455596 NCOR1O75376 2440 aa23.48■■□□□ 1.35
HMGB3-205ENST00000455596 A0A1B0GUA9 196 aa23.47■■□□□ 1.35
HMGB3-205ENST00000455596 EYA4O95677 639 aa23.47■■□□□ 1.35
HMGB3-205ENST00000455596 CDC25AP30304 524 aa23.47■■□□□ 1.35
HMGB3-205ENST00000455596 SMAD4Q13485 552 aaKnown RBP23.47■■□□□ 1.35
HMGB3-205ENST00000455596 SMC1AQ14683 1233 aaKnown RBP23.47■■□□□ 1.35
HMGB3-205ENST00000455596 FAM187BQ17R55 369 aa23.47■■□□□ 1.35
HMGB3-205ENST00000455596 ZNF280BQ86YH2 543 aa23.47■■□□□ 1.35
HMGB3-205ENST00000455596 DEPTORQ8TB45 409 aa23.47■■□□□ 1.35
HMGB3-205ENST00000455596 KIFAP3Q92845 792 aa23.47■■□□□ 1.35
HMGB3-205ENST00000455596 IGSF21Q96ID5 467 aa23.47■■□□□ 1.35
HMGB3-205ENST00000455596 MSLNLQ96KJ4 702 aa23.47■■□□□ 1.35
HMGB3-205ENST00000455596 IFT74Q96LB3 600 aa23.47■■□□□ 1.35
HMGB3-205ENST00000455596 FZD8Q9H461 694 aa23.47■■□□□ 1.35
HMGB3-205ENST00000455596 BARX2Q9UMQ3 279 aaPredicted RBP23.47■■□□□ 1.35
HMGB3-205ENST00000455596 HES2Q9Y543 173 aa23.47■■□□□ 1.35
HMGB3-205ENST00000455596 HIDE1A8MVS5 230 aa23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms