RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 UPF2Q9HAU5 1272 aaKnown RBP14.33□□□□□ -0.12
CHD3-206ENST00000452447 TBC1D13Q9NVG8 400 aa14.33□□□□□ -0.12
CHD3-206ENST00000452447 NOL7Q9UMY1 257 aaKnown RBP14.33□□□□□ -0.12
CHD3-206ENST00000452447 A0A087WWV3 80 aa14.32□□□□□ -0.12
CHD3-206ENST00000452447 HIDE1A8MVS5 230 aa14.32□□□□□ -0.12
CHD3-206ENST00000452447 ST18O60284 1047 aa14.32□□□□□ -0.12
CHD3-206ENST00000452447 USO1O60763 962 aaKnown RBP14.32□□□□□ -0.12
CHD3-206ENST00000452447 SPATA31C1P0DKV0 1188 aa14.32□□□□□ -0.12
CHD3-206ENST00000452447 AXLP30530 894 aa14.32□□□□□ -0.12
CHD3-206ENST00000452447 TRAPPC10P48553 1259 aa14.32□□□□□ -0.12
CHD3-206ENST00000452447 TTC38Q5R3I4 469 aa14.32□□□□□ -0.12
CHD3-206ENST00000452447 NOTUMQ6P988 496 aa14.32□□□□□ -0.12
CHD3-206ENST00000452447 MRPL10Q7Z7H8 261 aaKnown RBP14.32□□□□□ -0.12
CHD3-206ENST00000452447 TMEM87AQ8NBN3 555 aa14.32□□□□□ -0.12
CHD3-206ENST00000452447 CNNM3Q8NE01 707 aa14.32□□□□□ -0.12
CHD3-206ENST00000452447 NACC1Q96RE7 527 aa14.32□□□□□ -0.12
CHD3-206ENST00000452447 NRDE2Q9H7Z3 1164 aa14.32□□□□□ -0.12
CHD3-206ENST00000452447 RSAD1Q9HA92 442 aa14.32□□□□□ -0.12
CHD3-206ENST00000452447 KANSL3Q9P2N6 904 aa14.32□□□□□ -0.12
CHD3-206ENST00000452447 KIF3AQ9Y496 699 aa14.32□□□□□ -0.12
CHD3-206ENST00000452447 CNTNAP2Q9UHC6 1331 aa14.32□□□□□ -0.12
CHD3-206ENST00000452447 C19orf67A6NJJ6 358 aa14.31□□□□□ -0.12
CHD3-206ENST00000452447 TSPAN1O60635 241 aa14.31□□□□□ -0.12
CHD3-206ENST00000452447 ARL2P36404 184 aa14.31□□□□□ -0.12
CHD3-206ENST00000452447 RBM10P98175 930 aaKnown RBP14.31□□□□□ -0.12
CHD3-206ENST00000452447 CAPSQ13938 189 aa14.31□□□□□ -0.12
CHD3-206ENST00000452447 LLGL2Q6P1M3 1020 aa14.31□□□□□ -0.12
CHD3-206ENST00000452447 AGMOQ6ZNB7 445 aa14.31□□□□□ -0.12
CHD3-206ENST00000452447 MAEAQ7L5Y9 396 aa14.31□□□□□ -0.12
CHD3-206ENST00000452447 MRPL43Q8N983 215 aaKnown RBP14.31□□□□□ -0.12
CHD3-206ENST00000452447 MCPH1Q8NEM0 835 aa14.31□□□□□ -0.12
CHD3-206ENST00000452447 ASAP3Q8TDY4 903 aa14.31□□□□□ -0.12
CHD3-206ENST00000452447 FAM193BQ96PV7 902 aaPredicted RBP14.31□□□□□ -0.12
CHD3-206ENST00000452447 LRFN3Q9BTN0 628 aa14.31□□□□□ -0.12
CHD3-206ENST00000452447 POLR3CQ9BUI4 534 aaPredicted RBP14.31□□□□□ -0.12
CHD3-206ENST00000452447 TRIM6Q9C030 488 aaPredicted RBP14.31□□□□□ -0.12
CHD3-206ENST00000452447 POLR3FQ9H1D9 316 aaPredicted RBP14.31□□□□□ -0.12
CHD3-206ENST00000452447 UBN1Q9NPG3 1134 aa14.31□□□□□ -0.12
CHD3-206ENST00000452447 C2orf71A6NGG8 1288 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 DCXO43602 365 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 GPR37L1O60883 481 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 MED24O75448 989 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 GALTP07902 379 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 ITGA4P13612 1032 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 NCLP19338 710 aaKnown RBP14.3□□□□□ -0.12
CHD3-206ENST00000452447 GLRA2P23416 452 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 RPA1P27694 616 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 UBXN11Q5T124 520 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 HAUS3Q68CZ6 603 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 TMEM184AQ6ZMB5 413 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 IFNLR1Q8IU57 520 aaPredicted RBP14.3□□□□□ -0.12
CHD3-206ENST00000452447 VPS52Q8N1B4 723 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 VN1R2Q8NFZ6 395 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 CCDC51Q96ER9 411 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 IGSF21Q96ID5 467 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 CPB2Q96IY4 423 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 NFKBIZQ9BYH8 718 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 DBR1Q9UK59 544 aaKnown RBP14.3□□□□□ -0.12
CHD3-206ENST00000452447 USP15Q9Y4E8 981 aaPredicted RBP14.3□□□□□ -0.12
CHD3-206ENST00000452447 FAM86C2PA6NEL3 165 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 LRRIQ4A6NIV6 560 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 CXCL14O95715 111 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 ALDH2P05091 517 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 U2AF2P26368 475 aaKnown RBP eCLIP14.3□□□□□ -0.12
CHD3-206ENST00000452447 MBTD1Q05BQ5 628 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 POTEGQ6S5H5 508 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 DDX53Q86TM3 631 aaKnown RBP14.3□□□□□ -0.12
CHD3-206ENST00000452447 TMEM173Q86WV6 379 aaPredicted RBP14.3□□□□□ -0.12
CHD3-206ENST00000452447 ZNF280BQ86YH2 543 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 HACE1Q8IYU2 909 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 EIF2AQ9BY44 585 aaKnown RBP14.3□□□□□ -0.12
CHD3-206ENST00000452447 CSRNP2Q9H175 543 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 GPRC5CQ9NQ84 441 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 DNAJB4Q9UDY4 337 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 IPPQ9Y573 584 aa14.3□□□□□ -0.12
CHD3-206ENST00000452447 TDRD15B5MCY1 1934 aaKnown RBP14.29□□□□□ -0.12
CHD3-206ENST00000452447 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.29□□□□□ -0.12
CHD3-206ENST00000452447 ARHGEF35A5YM69 484 aa14.29□□□□□ -0.12
CHD3-206ENST00000452447 POMCP01189 267 aa14.29□□□□□ -0.12
CHD3-206ENST00000452447 HOXB8P17481 243 aaPredicted RBP14.29□□□□□ -0.12
CHD3-206ENST00000452447 ARF4P18085 180 aaPredicted RBP14.29□□□□□ -0.12
CHD3-206ENST00000452447 SLC11A1P49279 550 aa14.29□□□□□ -0.12
CHD3-206ENST00000452447 GIT2Q14161 759 aa14.29□□□□□ -0.12
CHD3-206ENST00000452447 ANKRD54Q6NXT1 300 aa14.29□□□□□ -0.12
CHD3-206ENST00000452447 SMG8Q8ND04 991 aaKnown RBP14.29□□□□□ -0.12
CHD3-206ENST00000452447 RAB34Q9BZG1 259 aa14.29□□□□□ -0.12
CHD3-206ENST00000452447 STK39Q9UEW8 545 aa14.29□□□□□ -0.12
CHD3-206ENST00000452447 DDHD2O94830 711 aa14.28□□□□□ -0.12
CHD3-206ENST00000452447 MUTP22033 750 aa14.28□□□□□ -0.12
CHD3-206ENST00000452447 CCT6AP40227 531 aaKnown RBP14.28□□□□□ -0.12
CHD3-206ENST00000452447 FXR2P51116 673 aaKnown RBP eCLIP14.28□□□□□ -0.122e-6■□□□□ 9.4
CHD3-206ENST00000452447 AFF1P51825 1210 aaKnown RBP14.28□□□□□ -0.12
CHD3-206ENST00000452447 KCNC3Q14003 757 aa14.28□□□□□ -0.12
CHD3-206ENST00000452447 NBR1Q14596 966 aa14.28□□□□□ -0.12
CHD3-206ENST00000452447 AMHR2Q16671 573 aa14.28□□□□□ -0.12
CHD3-206ENST00000452447 MCTP1Q6DN14 999 aa14.28□□□□□ -0.12
CHD3-206ENST00000452447 PADI6Q6TGC4 694 aa14.28□□□□□ -0.12
CHD3-206ENST00000452447 ZBTB8OSQ8IWT0 167 aa14.28□□□□□ -0.12
CHD3-206ENST00000452447 CASP10Q92851 521 aa14.28□□□□□ -0.12
CHD3-206ENST00000452447 TMEM175Q9BSA9 504 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms