RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 LZTS1Q9Y250 596 aa17.2■□□□□ 0.34
LIMS1-210ENST00000449684 TSPAN1O60635 241 aa17.19■□□□□ 0.34
LIMS1-210ENST00000449684 OFD1O75665 1012 aa17.19■□□□□ 0.34
LIMS1-210ENST00000449684 ITGA4P13612 1032 aa17.19■□□□□ 0.34
LIMS1-210ENST00000449684 HOXA11P31270 313 aaPredicted RBP17.19■□□□□ 0.34
LIMS1-210ENST00000449684 GTF2F1P35269 517 aaKnown RBP eCLIP17.19■□□□□ 0.34
LIMS1-210ENST00000449684 PRPHP41219 470 aa17.19■□□□□ 0.34
LIMS1-210ENST00000449684 BCAR1P56945 870 aa17.19■□□□□ 0.34
LIMS1-210ENST00000449684 ERVFC1P60507 584 aa17.19■□□□□ 0.34
LIMS1-210ENST00000449684 ZRSR1Q15695 479 aaKnown RBP17.19■□□□□ 0.34
LIMS1-210ENST00000449684 CLUL1Q15846 466 aa17.19■□□□□ 0.34
LIMS1-210ENST00000449684 PLPP4Q5VZY2 271 aa17.19■□□□□ 0.34
LIMS1-210ENST00000449684 ADGRD2Q7Z7M1 963 aa17.19■□□□□ 0.34
LIMS1-210ENST00000449684 TMEM87AQ8NBN3 555 aa17.19■□□□□ 0.34
LIMS1-210ENST00000449684 CPB2Q96IY4 423 aa17.19■□□□□ 0.34
LIMS1-210ENST00000449684 IFT74Q96LB3 600 aa17.19■□□□□ 0.34
LIMS1-210ENST00000449684 TCF25Q9BQ70 676 aa17.19■□□□□ 0.34
LIMS1-210ENST00000449684 NFKBIZQ9BYH8 718 aa17.19■□□□□ 0.34
LIMS1-210ENST00000449684 RSAD1Q9HA92 442 aa17.19■□□□□ 0.34
LIMS1-210ENST00000449684 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.19■□□□□ 0.34
LIMS1-210ENST00000449684 DDX19AQ9NUU7 478 aaKnown RBP17.19■□□□□ 0.34
LIMS1-210ENST00000449684 DNM3Q9UQ16 869 aa17.19■□□□□ 0.34
LIMS1-210ENST00000449684 CNTNAP2Q9UHC6 1331 aa17.19■□□□□ 0.34
LIMS1-210ENST00000449684 FSD2A1L4K1 749 aa17.18■□□□□ 0.34
LIMS1-210ENST00000449684 NT5C1B-RDH14C9J2C7 533 aa17.18■□□□□ 0.34
LIMS1-210ENST00000449684 CYP11B2P19099 503 aa17.18■□□□□ 0.34
LIMS1-210ENST00000449684 MBTD1Q05BQ5 628 aa17.18■□□□□ 0.34
LIMS1-210ENST00000449684 MRPL10Q7Z7H8 261 aaKnown RBP17.18■□□□□ 0.34
LIMS1-210ENST00000449684 IFNLR1Q8IU57 520 aaPredicted RBP17.18■□□□□ 0.34
LIMS1-210ENST00000449684 IGSF22Q8N9C0 903 aa17.18■□□□□ 0.34
LIMS1-210ENST00000449684 DEPTORQ8TB45 409 aa17.18■□□□□ 0.34
LIMS1-210ENST00000449684 BACH2Q9BYV9 841 aa17.18■□□□□ 0.34
LIMS1-210ENST00000449684 CSRNP2Q9H175 543 aa17.18■□□□□ 0.34
LIMS1-210ENST00000449684 C2orf40Q9H1Z8 148 aa17.18■□□□□ 0.34
LIMS1-210ENST00000449684 BHMT2Q9H2M3 363 aa17.18■□□□□ 0.34
LIMS1-210ENST00000449684 NGRNQ9NPE2 291 aaKnown RBP17.18■□□□□ 0.34
LIMS1-210ENST00000449684 TBC1D13Q9NVG8 400 aa17.18■□□□□ 0.34
LIMS1-210ENST00000449684 KANSL3Q9P2N6 904 aa17.18■□□□□ 0.34
LIMS1-210ENST00000449684 PCDHGC5Q9Y5F6 944 aa17.18■□□□□ 0.34
LIMS1-210ENST00000449684 NCOR1O75376 2440 aa17.18■□□□□ 0.34
LIMS1-210ENST00000449684 PLXNA4Q9HCM2 1894 aa17.18■□□□□ 0.34
LIMS1-210ENST00000449684 GRXCR2A6NFK2 248 aa17.17■□□□□ 0.34
LIMS1-210ENST00000449684 MEIS3P2A8K0S8 358 aa17.17■□□□□ 0.34
LIMS1-210ENST00000449684 PER2O15055 1255 aa17.17■□□□□ 0.34
LIMS1-210ENST00000449684 LINC01565O15544 149 aa17.17■□□□□ 0.34
LIMS1-210ENST00000449684 SRGAP2BP0DMP2 458 aa17.17■□□□□ 0.34
LIMS1-210ENST00000449684 IL9P15248 144 aa17.17■□□□□ 0.34
LIMS1-210ENST00000449684 LIG1P18858 919 aa17.17■□□□□ 0.34
LIMS1-210ENST00000449684 NCLP19338 710 aaKnown RBP17.17■□□□□ 0.34
LIMS1-210ENST00000449684 SSTR3P32745 418 aaPredicted RBP17.17■□□□□ 0.34
LIMS1-210ENST00000449684 ADAM15Q13444 863 aa17.17■□□□□ 0.34
LIMS1-210ENST00000449684 COL19A1Q14993 1142 aa17.17■□□□□ 0.34
LIMS1-210ENST00000449684 PPP2R5AQ15172 486 aa17.17■□□□□ 0.34
LIMS1-210ENST00000449684 CTC1Q2NKJ3 1217 aa17.17■□□□□ 0.34
LIMS1-210ENST00000449684 UBXN11Q5T124 520 aa17.17■□□□□ 0.34
LIMS1-210ENST00000449684 AGMOQ6ZNB7 445 aa17.17■□□□□ 0.34
LIMS1-210ENST00000449684 SLC39A11Q8N1S5 342 aa17.17■□□□□ 0.34
LIMS1-210ENST00000449684 EFHBQ8N7U6 833 aa17.17■□□□□ 0.34
LIMS1-210ENST00000449684 CDCA3Q99618 268 aaPredicted RBP17.17■□□□□ 0.34
LIMS1-210ENST00000449684 APOL6Q9BWW8 343 aa17.17■□□□□ 0.34
LIMS1-210ENST00000449684 NRDE2Q9H7Z3 1164 aa17.17■□□□□ 0.34
LIMS1-210ENST00000449684 PRMT7Q9NVM4 692 aaPredicted RBP17.17■□□□□ 0.34
LIMS1-210ENST00000449684 IPPQ9Y573 584 aa17.17■□□□□ 0.34
LIMS1-210ENST00000449684 VPS37CA5D8V6 355 aaPredicted RBP17.16■□□□□ 0.34
LIMS1-210ENST00000449684 POMCP01189 267 aa17.16■□□□□ 0.34
LIMS1-210ENST00000449684 ARF4P18085 180 aaPredicted RBP17.16■□□□□ 0.34
LIMS1-210ENST00000449684 PDCP20941 246 aa17.16■□□□□ 0.34
LIMS1-210ENST00000449684 LTBRP36941 435 aa17.16■□□□□ 0.34
LIMS1-210ENST00000449684 SMC1AQ14683 1233 aaKnown RBP17.16■□□□□ 0.34
LIMS1-210ENST00000449684 ECM1Q16610 540 aa17.16■□□□□ 0.34
LIMS1-210ENST00000449684 KIFAP3Q92845 792 aa17.16■□□□□ 0.34
LIMS1-210ENST00000449684 CDK5RAP3Q96JB5 506 aa17.16■□□□□ 0.34
LIMS1-210ENST00000449684 EIF2AQ9BY44 585 aaKnown RBP17.16■□□□□ 0.34
LIMS1-210ENST00000449684 CD207Q9UJ71 328 aa17.16■□□□□ 0.34
LIMS1-210ENST00000449684 VWA3AA6NCI4 1184 aa17.15■□□□□ 0.34
LIMS1-210ENST00000449684 PP2D1A8MPX8 630 aa17.15■□□□□ 0.34
LIMS1-210ENST00000449684 NPTXRO95502 500 aa17.15■□□□□ 0.34
LIMS1-210ENST00000449684 ALDH2P05091 517 aa17.15■□□□□ 0.34
LIMS1-210ENST00000449684 CDC25AP30304 524 aa17.15■□□□□ 0.34
LIMS1-210ENST00000449684 NAMPTP43490 491 aa17.15■□□□□ 0.34
LIMS1-210ENST00000449684 ATP2C1P98194 919 aaPredicted RBP17.15■□□□□ 0.34
LIMS1-210ENST00000449684 DLX2Q07687 328 aaPredicted RBP17.15■□□□□ 0.34
LIMS1-210ENST00000449684 MAPK6Q16659 721 aa17.15■□□□□ 0.34
LIMS1-210ENST00000449684 SLC27A1Q6PCB7 646 aa17.15■□□□□ 0.34
LIMS1-210ENST00000449684 PRIMPOLQ96LW4 560 aa17.15■□□□□ 0.34
LIMS1-210ENST00000449684 HES2Q9Y543 173 aa17.15■□□□□ 0.34
LIMS1-210ENST00000449684 ATG2AQ2TAZ0 1938 aa17.15■□□□□ 0.34
LIMS1-210ENST00000449684 BDP1A6H8Y1 2624 aa17.15■□□□□ 0.34
LIMS1-210ENST00000449684 E9PMD0 336 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 FSCN2O14926 492 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 B4GALT5O43286 388 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 TBX10O75333 385 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 NR1I2O75469 434 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 EYA4O95677 639 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 SSBP05455 408 aaKnown RBP eCLIP17.14■□□□□ 0.33
LIMS1-210ENST00000449684 GALTP07902 379 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 PRPF4BQ13523 1007 aaKnown RBP17.14■□□□□ 0.33
LIMS1-210ENST00000449684 AMHR2Q16671 573 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 DUSP6Q16828 381 aa17.14■□□□□ 0.33
LIMS1-210ENST00000449684 BRAPQ7Z569 592 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms