RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 C1orf54Q8WWF1 131 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 DCPSQ96C86 337 aaKnown RBP8.26□□□□□ -1.09
NEDD9-204ENST00000448183 SLC13A1Q9BZW2 595 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 AP5M1Q9H0R1 490 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 DDX56Q9NY93 547 aaKnown RBP8.26□□□□□ -1.09
NEDD9-204ENST00000448183 SLC9A2Q9UBY0 812 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 SMG5Q9UPR3 1016 aaKnown RBP8.26□□□□□ -1.09
NEDD9-204ENST00000448183 TRAF3IP3Q9Y228 551 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 SSU72P8A0A1W2PR75 194 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 PP2D1A8MPX8 630 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 USP17L15C9J2P7 530 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 USP17L13C9JLJ4 530 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 USP17L11C9JVI0 530 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 USP17L18D6R9N7 530 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 USP17L22D6RA61 530 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 USP17L17D6RBQ6 530 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 USP17L19D6RCP7 530 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 USP17L20D6RJB6 530 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 CDH16O75309 829 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 USP17L24Q0WX57 530 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 HIC1Q14526 733 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 GRM4Q14833 912 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 MAPK6Q16659 721 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 EAPPQ56P03 285 aaPredicted RBP8.26□□□□□ -1.09
NEDD9-204ENST00000448183 FBXW10Q5XX13 1052 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 HEATR6Q6AI08 1181 aaKnown RBP8.26□□□□□ -1.09
NEDD9-204ENST00000448183 USP17L6PQ6QN14 398 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 ANGPTL8Q6UXH0 198 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 KRT27Q7Z3Y8 459 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 RASSF3Q86WH2 238 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 AGGF1Q8N302 714 aaeCLIP8.26□□□□□ -1.096e-8■□□□□ 10.6
NEDD9-204ENST00000448183 TTC8Q8TAM2 541 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 DACH2Q96NX9 599 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 CHP1Q99653 195 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 TBC1D22BQ9NU19 505 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 BARHL2Q9NY43 387 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 PCSK1NQ9UHG2 260 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 PRDM15P57071 1507 aaPredicted RBP8.26□□□□□ -1.09
NEDD9-204ENST00000448183 TMEM247A6NEH6 219 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 KIF28PB7ZC32 967 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 PPP1R12AO14974 1030 aaPredicted RBP8.26□□□□□ -1.09
NEDD9-204ENST00000448183 TRIM66O15016 1216 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 SNX2O60749 519 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 DNAJC6O75061 913 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 SYF2O95926 243 aaKnown RBP8.26□□□□□ -1.09
NEDD9-204ENST00000448183 ZSCAN20P17040 1043 aaPredicted RBP8.26□□□□□ -1.09
NEDD9-204ENST00000448183 ANXA13P27216 316 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 TYK2P29597 1187 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 KRT17Q04695 432 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 EEPD1Q7L9B9 569 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 FRMD5Q7Z6J6 570 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 ATL2Q8NHH9 583 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 GFM2Q969S9 779 aaKnown RBP8.26□□□□□ -1.09
NEDD9-204ENST00000448183 FAM213AQ9BRX8 229 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 FSD1LQ9BXM9 530 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 MAGEB5Q9BZ81 275 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 CPVLQ9H3G5 476 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 TRABDQ9H4I3 376 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.26□□□□□ -1.09
NEDD9-204ENST00000448183 OLA1Q9NTK5 396 aaKnown RBP8.26□□□□□ -1.09
NEDD9-204ENST00000448183 PSD3Q9NYI0 1048 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 EHD2Q9NZN4 543 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 USP15Q9Y4E8 981 aaPredicted RBP8.26□□□□□ -1.09
NEDD9-204ENST00000448183 ITIH6Q6UXX5 1313 aa8.26□□□□□ -1.09
NEDD9-204ENST00000448183 SLC16A4O15374 487 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 KRT4P19013 534 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 FGFR4P22455 802 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 GNA15P30679 374 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 KLC1Q07866 573 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 MTMR1Q13613 665 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 MAPRE2Q15555 327 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 SLC18A3Q16572 532 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 DSTYKQ6XUX3 929 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 PRPF38AQ8NAV1 312 aaKnown RBP8.25□□□□□ -1.09
NEDD9-204ENST00000448183 IL17RAQ96F46 866 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 KIF2CQ99661 725 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 NBPF3Q9H094 633 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 METP08581 1390 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 POTEFA5A3E0 1075 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 HNRNPCP07910 306 aaKnown RBP eCLIP8.25□□□□□ -1.091e-6■■■■□ 21.3
NEDD9-204ENST00000448183 POTEIP0CG38 1075 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 ELF1P32519 619 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 RANBP1P43487 201 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 PSMC1P62191 440 aaKnown RBP8.25□□□□□ -1.09
NEDD9-204ENST00000448183 KRT76Q01546 638 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 ROR1Q01973 937 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 POU5F1BQ06416 359 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 GRAPQ13588 217 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 CAPRIN1Q14444 709 aaKnown RBP8.25□□□□□ -1.09
NEDD9-204ENST00000448183 SUPT20HL1Q3ZLR7 823 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 SUSD4Q5VX71 490 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 ANKRD40Q6AI12 368 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 POTEGQ6S5H5 508 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 POTEEQ6S8J3 1075 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 SYDE1Q6ZW31 735 aaPredicted RBP8.25□□□□□ -1.09
NEDD9-204ENST00000448183 CDKL3Q8IVW4 592 aaPredicted RBP8.25□□□□□ -1.09
NEDD9-204ENST00000448183 GRAPLQ8TC17 118 aaPredicted RBP8.25□□□□□ -1.09
NEDD9-204ENST00000448183 RNF217Q8TC41 542 aa8.25□□□□□ -1.09
NEDD9-204ENST00000448183 SH3RF3Q8TEJ3 882 aaPredicted RBP8.25□□□□□ -1.09
NEDD9-204ENST00000448183 FBXO2Q9UK22 296 aaPredicted RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms