RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 PRPF6O94906 941 aaKnown RBP17.34■□□□□ 0.37
USP40-206ENST00000443711 UBE4BO95155 1302 aa17.34■□□□□ 0.37
USP40-206ENST00000443711 FGFR4P22455 802 aa17.34■□□□□ 0.37
USP40-206ENST00000443711 PAK2Q13177 524 aa17.34■□□□□ 0.37
USP40-206ENST00000443711 PRPF4BQ13523 1007 aaKnown RBP17.34■□□□□ 0.37
USP40-206ENST00000443711 FAM43BQ6ZT52 329 aaPredicted RBP17.34■□□□□ 0.37
USP40-206ENST00000443711 TAS1R3Q7RTX0 852 aa17.34■□□□□ 0.37
USP40-206ENST00000443711 FAM228AQ86W67 206 aa17.34■□□□□ 0.37
USP40-206ENST00000443711 GLIS3Q8NEA6 775 aa17.34■□□□□ 0.37
USP40-206ENST00000443711 TMEM206Q9H813 350 aa17.34■□□□□ 0.37
USP40-206ENST00000443711 AGO3Q9H9G7 860 aaKnown RBP17.34■□□□□ 0.37
USP40-206ENST00000443711 ERVK-5Q9HDB9 667 aa17.34■□□□□ 0.37
USP40-206ENST00000443711 ST3GAL5Q9UNP4 418 aa17.34■□□□□ 0.37
USP40-206ENST00000443711 NBNO60934 754 aa17.33■□□□□ 0.36
USP40-206ENST00000443711 ITGB8P26012 769 aa17.33■□□□□ 0.36
USP40-206ENST00000443711 AXLP30530 894 aa17.33■□□□□ 0.36
USP40-206ENST00000443711 CD52P31358 61 aa17.33■□□□□ 0.36
USP40-206ENST00000443711 PPP1R2P41236 205 aa17.33■□□□□ 0.36
USP40-206ENST00000443711 NLRP12P59046 1061 aa17.33■□□□□ 0.36
USP40-206ENST00000443711 NFX1Q12986 1120 aaKnown RBP17.33■□□□□ 0.36
USP40-206ENST00000443711 STIM1Q13586 685 aa17.33■□□□□ 0.36
USP40-206ENST00000443711 GPNMBQ14956 572 aa17.33■□□□□ 0.36
USP40-206ENST00000443711 AMHR2Q16671 573 aa17.33■□□□□ 0.36
USP40-206ENST00000443711 TMEM132AQ24JP5 1023 aa17.33■□□□□ 0.36
USP40-206ENST00000443711 COBLL1Q53SF7 1204 aa17.33■□□□□ 0.36
USP40-206ENST00000443711 MAP4K3Q8IVH8 894 aa17.33■□□□□ 0.36
USP40-206ENST00000443711 RPUSD2Q8IZ73 545 aaKnown RBP17.33■□□□□ 0.36
USP40-206ENST00000443711 SYCP3Q8IZU3 236 aa17.33■□□□□ 0.36
USP40-206ENST00000443711 GUF1Q8N442 669 aaKnown RBP17.33■□□□□ 0.36
USP40-206ENST00000443711 SCFD1Q8WVM8 642 aa17.33■□□□□ 0.36
USP40-206ENST00000443711 MRPL4Q9BYD3 311 aaKnown RBP17.33■□□□□ 0.36
USP40-206ENST00000443711 OSBPL7Q9BZF2 842 aa17.33■□□□□ 0.36
USP40-206ENST00000443711 PADI3Q9ULW8 664 aa17.33■□□□□ 0.36
USP40-206ENST00000443711 TSPAN1O60635 241 aa17.32■□□□□ 0.36
USP40-206ENST00000443711 CXCL10P02778 98 aa17.32■□□□□ 0.36
USP40-206ENST00000443711 BMP6P22004 513 aa17.32■□□□□ 0.36
USP40-206ENST00000443711 RGS19P49795 217 aa17.32■□□□□ 0.36
USP40-206ENST00000443711 BMT2Q1RMZ1 405 aa17.32■□□□□ 0.36
USP40-206ENST00000443711 DEFB128Q7Z7B8 93 aa17.32■□□□□ 0.36
USP40-206ENST00000443711 SMYD4Q8IYR2 804 aaPredicted RBP17.32■□□□□ 0.36
USP40-206ENST00000443711 SEPT8Q92599 483 aa17.32■□□□□ 0.36
USP40-206ENST00000443711 BICD1Q96G01 975 aa17.32■□□□□ 0.36
USP40-206ENST00000443711 IFIH1Q9BYX4 1025 aaKnown RBP17.32■□□□□ 0.36
USP40-206ENST00000443711 CHST12Q9NRB3 414 aa17.32■□□□□ 0.36
USP40-206ENST00000443711 ZMYND8Q9ULU4 1186 aaPredicted RBP17.32■□□□□ 0.36
USP40-206ENST00000443711 MAPK8IP1Q9UQF2 711 aa17.32■□□□□ 0.36
USP40-206ENST00000443711 TET1Q8NFU7 2136 aa17.32■□□□□ 0.36
USP40-206ENST00000443711 CNTNAP2Q9UHC6 1331 aa17.31■□□□□ 0.36
USP40-206ENST00000443711 B4GALT5O43286 388 aa17.31■□□□□ 0.36
USP40-206ENST00000443711 PIGRP01833 764 aa17.31■□□□□ 0.36
USP40-206ENST00000443711 CSF2RAP15509 400 aa17.31■□□□□ 0.36
USP40-206ENST00000443711 SYN1P17600 705 aa17.31■□□□□ 0.36
USP40-206ENST00000443711 ARF4P18085 180 aaPredicted RBP17.31■□□□□ 0.36
USP40-206ENST00000443711 PRCPP42785 496 aa17.31■□□□□ 0.36
USP40-206ENST00000443711 KCNA1Q09470 495 aa17.31■□□□□ 0.36
USP40-206ENST00000443711 PPIGQ13427 754 aaKnown RBP eCLIP17.31■□□□□ 0.36
USP40-206ENST00000443711 KNOP1Q1ED39 458 aaKnown RBP17.31■□□□□ 0.36
USP40-206ENST00000443711 PLEKHG4Q58EX7 1191 aa17.31■□□□□ 0.36
USP40-206ENST00000443711 ZPBP2Q6X784 338 aa17.31■□□□□ 0.36
USP40-206ENST00000443711 NELFCDQ8IXH7 590 aa17.31■□□□□ 0.36
USP40-206ENST00000443711 ADSSL1Q8N142 457 aa17.31■□□□□ 0.36
USP40-206ENST00000443711 MLKLQ8NB16 471 aa17.31■□□□□ 0.36
USP40-206ENST00000443711 APBB2Q92870 758 aa17.31■□□□□ 0.36
USP40-206ENST00000443711 BADQ92934 168 aa17.31■□□□□ 0.36
USP40-206ENST00000443711 ACO2Q99798 780 aaKnown RBP17.31■□□□□ 0.36
USP40-206ENST00000443711 LBHD1Q9BQE6 289 aaPredicted RBP17.31■□□□□ 0.36
USP40-206ENST00000443711 TARS2Q9BW92 718 aaKnown RBP17.31■□□□□ 0.36
USP40-206ENST00000443711 AGPAT5Q9NUQ2 364 aa17.31■□□□□ 0.36
USP40-206ENST00000443711 PIN4Q9Y237 131 aaKnown RBP17.31■□□□□ 0.36
USP40-206ENST00000443711 SYCE3A1L190 88 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 HNRNPDLO14979 420 aaKnown RBP17.3■□□□□ 0.36
USP40-206ENST00000443711 N4BP3O15049 544 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 EDN1P05305 212 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 PFKMP08237 780 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 ZSCAN20P17040 1043 aaPredicted RBP17.3■□□□□ 0.36
USP40-206ENST00000443711 HOXD13P35453 343 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 LIG4P49917 911 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 FPGSQ05932 587 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 ZSCAN23Q3MJ62 389 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 ATF7IP2Q5U623 682 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 NOTUMQ6P988 496 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 DBF4BQ8NFT6 615 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 DHTKD1Q96HY7 919 aaPredicted RBP17.3■□□□□ 0.36
USP40-206ENST00000443711 CPB2Q96IY4 423 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 FTHL17Q9BXU8 183 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 GBP3Q9H0R5 595 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 IL23AQ9NPF7 189 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 ANO10Q9NW15 660 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 DACH1Q9UI36 760 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 TNFSF13BQ9Y275 285 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 USP20Q9Y2K6 914 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 LTBP2Q14767 1821 aa17.3■□□□□ 0.36
USP40-206ENST00000443711 A0A1B0GUA9 196 aa17.29■□□□□ 0.36
USP40-206ENST00000443711 TTLL13PA6NNM8 815 aa17.29■□□□□ 0.36
USP40-206ENST00000443711 PPP1R3GB7ZBB8 358 aa17.29■□□□□ 0.36
USP40-206ENST00000443711 PSMA7O14818 248 aa17.29■□□□□ 0.36
USP40-206ENST00000443711 CCDC192P0DO97 292 aa17.29■□□□□ 0.36
USP40-206ENST00000443711 CD44P16070 742 aaKnown RBP17.29■□□□□ 0.36
USP40-206ENST00000443711 HOXA11P31270 313 aaPredicted RBP17.29■□□□□ 0.36
USP40-206ENST00000443711 SNRPFP62306 86 aaKnown RBP17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms