RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 CSRNP2Q9H175 543 aa16.8■□□□□ 0.28
LIMS3-201ENST00000437679 ZSCAN16Q9H4T2 348 aaPredicted RBP16.8■□□□□ 0.28
LIMS3-201ENST00000437679 PRMT7Q9NVM4 692 aaPredicted RBP16.8■□□□□ 0.28
LIMS3-201ENST00000437679 INPP5FQ9Y2H2 1132 aa16.8■□□□□ 0.28
LIMS3-201ENST00000437679 CUL9Q8IWT3 2517 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 CNTNAP2Q9UHC6 1331 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 OFD1O75665 1012 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 SSBP05455 408 aaKnown RBP eCLIP16.79■□□□□ 0.28
LIMS3-201ENST00000437679 NCLP19338 710 aaKnown RBP16.79■□□□□ 0.28
LIMS3-201ENST00000437679 PPM1AP35813 382 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 MAPK6Q16659 721 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 TMEM132AQ24JP5 1023 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 RINT1Q6NUQ1 792 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 KCNT2Q6UVM3 1135 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 PPP4R3CPQ6ZMV5 832 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 AGMOQ6ZNB7 445 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 KCNK18Q7Z418 384 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 HACE1Q8IYU2 909 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 RASSF8Q8NHQ8 419 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 URGCPQ8TCY9 931 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 SYMPKQ92797 1274 aaKnown RBP16.79■□□□□ 0.28
LIMS3-201ENST00000437679 PPP2R3CQ969Q6 453 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 DRC1Q96MC2 740 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 FZD8Q9H461 694 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 RSAD1Q9HA92 442 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 POLD4Q9HCU8 107 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 UBN1Q9NPG3 1134 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 PUF60Q9UHX1 559 aaKnown RBP16.79■□□□□ 0.28
LIMS3-201ENST00000437679 CLIC4Q9Y696 253 aa16.79■□□□□ 0.28
LIMS3-201ENST00000437679 PLXNA4Q9HCM2 1894 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 REV3LO60673 3130 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 CARNS1A5YM72 827 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 MEIS3P2A8K0S8 358 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 DLL1O00548 723 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 B4GALT5O43286 388 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 NCK2O43639 380 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 ITGA4P13612 1032 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 PDIA4P13667 645 aaKnown RBP16.78■□□□□ 0.28
LIMS3-201ENST00000437679 LIG1P18858 919 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 DNAJB1P25685 340 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 ALDH7A1P49419 539 aaKnown RBP16.78■□□□□ 0.28
LIMS3-201ENST00000437679 EFNA5P52803 228 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 TFF2Q03403 129 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 KRT17Q04695 432 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 RNASELQ05823 741 aaKnown RBP16.78■□□□□ 0.28
LIMS3-201ENST00000437679 FAM187BQ17R55 369 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 TMEM119Q4V9L6 283 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 FAM173BQ6P4H8 233 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 SYT2Q8N9I0 419 aaPredicted RBP16.78■□□□□ 0.28
LIMS3-201ENST00000437679 RUSC1Q9BVN2 902 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 TIPINQ9BVW5 301 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 EIF2AQ9BY44 585 aaKnown RBP16.78■□□□□ 0.28
LIMS3-201ENST00000437679 TBC1D13Q9NVG8 400 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 SPG21Q9NZD8 308 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 IPPQ9Y573 584 aa16.78■□□□□ 0.28
LIMS3-201ENST00000437679 ATG2AQ2TAZ0 1938 aa16.77■□□□□ 0.28
LIMS3-201ENST00000437679 A0A1B0GUA9 196 aa16.77■□□□□ 0.28
LIMS3-201ENST00000437679 CCDC169A6NNP5 214 aa16.77■□□□□ 0.28
LIMS3-201ENST00000437679 HIP1RO75146 1068 aa16.77■□□□□ 0.28
LIMS3-201ENST00000437679 PRKCBP05771 671 aa16.77■□□□□ 0.28
LIMS3-201ENST00000437679 PLA2G4BP0C869 781 aa16.77■□□□□ 0.28
LIMS3-201ENST00000437679 PEX3P56589 373 aa16.77■□□□□ 0.28
LIMS3-201ENST00000437679 PLCB3Q01970 1234 aa16.77■□□□□ 0.28
LIMS3-201ENST00000437679 CEBPZQ03701 1054 aaKnown RBP16.77■□□□□ 0.28
LIMS3-201ENST00000437679 DMP1Q13316 513 aaPredicted RBP16.77■□□□□ 0.28
LIMS3-201ENST00000437679 PRPF4BQ13523 1007 aaKnown RBP16.77■□□□□ 0.28
LIMS3-201ENST00000437679 CAMK1Q14012 370 aa16.77■□□□□ 0.28
LIMS3-201ENST00000437679 PTPAQ15257 358 aa16.77■□□□□ 0.28
LIMS3-201ENST00000437679 SLC27A1Q6PCB7 646 aa16.77■□□□□ 0.28
LIMS3-201ENST00000437679 C1orf186Q6ZWK4 172 aa16.77■□□□□ 0.28
LIMS3-201ENST00000437679 SMG8Q8ND04 991 aaKnown RBP16.77■□□□□ 0.28
LIMS3-201ENST00000437679 MICAL1Q8TDZ2 1067 aa16.77■□□□□ 0.28
LIMS3-201ENST00000437679 UBE2ZQ9H832 354 aaPredicted RBP16.77■□□□□ 0.28
LIMS3-201ENST00000437679 TLR9Q9NR96 1032 aa16.77■□□□□ 0.28
LIMS3-201ENST00000437679 KANSL3Q9P2N6 904 aa16.77■□□□□ 0.28
LIMS3-201ENST00000437679 LZTS1Q9Y250 596 aa16.77■□□□□ 0.28
LIMS3-201ENST00000437679 ACKR2O00590 384 aa16.76■□□□□ 0.27
LIMS3-201ENST00000437679 N4BP3O15049 544 aa16.76■□□□□ 0.27
LIMS3-201ENST00000437679 ZC3H11AO75152 810 aaKnown RBP eCLIP16.76■□□□□ 0.27
LIMS3-201ENST00000437679 NPTXRO95502 500 aa16.76■□□□□ 0.27
LIMS3-201ENST00000437679 GUCY2CP25092 1073 aa16.76■□□□□ 0.27
LIMS3-201ENST00000437679 MARCKSP29966 332 aaPredicted RBP16.76■□□□□ 0.27
LIMS3-201ENST00000437679 PBX3P40426 434 aa16.76■□□□□ 0.27
LIMS3-201ENST00000437679 SLC12A3P55017 1021 aa16.76■□□□□ 0.27
LIMS3-201ENST00000437679 BCAR1P56945 870 aa16.76■□□□□ 0.27
LIMS3-201ENST00000437679 GRIN1Q05586 938 aa16.76■□□□□ 0.27
LIMS3-201ENST00000437679 EP400NLQ6ZTU2 488 aa16.76■□□□□ 0.27
LIMS3-201ENST00000437679 CDR2LQ86X02 465 aaPredicted RBP16.76■□□□□ 0.27
LIMS3-201ENST00000437679 MRPS27Q92552 414 aaKnown RBP16.76■□□□□ 0.27
LIMS3-201ENST00000437679 PABPC5Q96DU9 382 aaKnown RBP16.76■□□□□ 0.27
LIMS3-201ENST00000437679 FAM193BQ96PV7 902 aaPredicted RBP16.76■□□□□ 0.27
LIMS3-201ENST00000437679 KIFC3Q9BVG8 833 aa16.76■□□□□ 0.27
LIMS3-201ENST00000437679 APOL6Q9BWW8 343 aa16.76■□□□□ 0.27
LIMS3-201ENST00000437679 COL25A1Q9BXS0 654 aaPredicted RBP16.76■□□□□ 0.27
LIMS3-201ENST00000437679 CCDC113Q9H0I3 377 aa16.76■□□□□ 0.27
LIMS3-201ENST00000437679 GBP3Q9H0R5 595 aa16.76■□□□□ 0.27
LIMS3-201ENST00000437679 NRDE2Q9H7Z3 1164 aa16.76■□□□□ 0.27
LIMS3-201ENST00000437679 C17orf75Q9HAS0 396 aa16.76■□□□□ 0.27
LIMS3-201ENST00000437679 KCND2Q9NZV8 630 aa16.76■□□□□ 0.27
LIMS3-201ENST00000437679 KCNG1Q9UIX4 513 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms