RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 COPB2P35606 906 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 RNF135Q8IUD6 432 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 PROM2Q8N271 834 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 EPAS1Q99814 870 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 ELP3Q9H9T3 547 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 STAP1Q9ULZ2 295 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 GPS1Q13098 491 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 NR1H4Q96RI1 486 aaPredicted RBP12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 IFNA8P32881 189 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 EFHC2Q5JST6 749 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 SFR1Q86XK3 245 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 CDC23Q9UJX2 597 aa12.83□□□□□ -0.36
CCDC88A-207ENST00000436346 PRRG1O14668 218 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 E2F6O75461 281 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 CYP2E1P05181 493 aaPredicted RBP12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 ROR1Q01973 937 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 IKBKBO14920 756 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 RALAP11233 206 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 STAT3P40763 770 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 EN1Q05925 392 aaPredicted RBP12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 MORF4L2Q15014 288 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 POLR3CQ9BUI4 534 aaPredicted RBP12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 C2orf40Q9H1Z8 148 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 KIAA1586Q9HCI6 787 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 IFNAR1P17181 557 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 SH3BGRP55822 239 aaPredicted RBP12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 PSMC1P62191 440 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 TMPRSS15P98073 1019 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 KRT76Q01546 638 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 FAM102AQ5T9C2 384 aaPredicted RBP12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 RHOT2Q8IXI1 618 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 RAB42Q8N4Z0 105 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 ZC3H15Q8WU90 426 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 CENPKQ9BS16 269 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 TRIM62Q9BVG3 475 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 SIK2Q9H0K1 926 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 PIN4Q9Y237 131 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 CACNA1SQ13698 1873 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 RAD54LQ92698 747 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 ULK4Q96C45 1275 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 MID2Q9UJV3 735 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 KRT37O76014 449 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 ANP32DO95626 131 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 ETF1P62495 437 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 UNC13DQ70J99 1090 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 NEK9Q8TD19 979 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 SCG3Q8WXD2 468 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 ARHGEF1Q92888 912 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 SDC4P31431 198 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 SNAPC2Q13487 334 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 ZNF235Q14590 738 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 ACAP3Q96P50 834 aa12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 RBAKQ9NYW8 714 aaPredicted RBP12.82□□□□□ -0.36
CCDC88A-207ENST00000436346 A0A0G2JND7 137 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 HEATR6Q6AI08 1181 aaKnown RBP12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 KRT80Q6KB66 452 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 DDX50Q9BQ39 737 aaKnown RBP12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 CPVLQ9H3G5 476 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 PIK3R2O00459 728 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 SEC31AO94979 1220 aaKnown RBP12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 PRDX5P30044 214 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 MAP2K2P36507 400 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 COPS2P61201 443 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 GFPT1Q06210 699 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 SPP2Q13103 211 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 PFKFB3Q16875 520 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 POU5F1BQ06416 359 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 RCSD1Q6JBY9 416 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 ACAD11Q709F0 780 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 MFN1Q8IWA4 741 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 PGBD3Q8N328 593 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 ATXN7L3BQ96GX2 97 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 ABHD8Q96I13 439 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 NFU1Q9UMS0 254 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 PACSIN2Q9UNF0 486 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 CCDC151A5D8V7 595 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 ZBED6P86452 979 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 NAALADL2Q58DX5 795 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 TTC7AQ9ULT0 858 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 EEF1DP29692 281 aaKnown RBP12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 YWHABP31946 246 aaKnown RBP12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 ANKRD40Q6AI12 368 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 EPM2AIP1Q7L775 607 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 MICALL2Q8IY33 904 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 CEP19Q96LK0 163 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 TMEM47Q9BQJ4 181 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 MAP1BP46821 2468 aaKnown RBP12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 APOL1O14791 398 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 DIAPH2O60879 1101 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 MOCS2O96007 188 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 VAMP7P51809 220 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 ADCY2Q08462 1091 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 TBC1D10CQ8IV04 446 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 OTULINQ96BN8 352 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 CHRNA5P30532 468 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 GCKP35557 465 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 FAM217BQ9NTX9 383 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 ANGPTL2Q9UKU9 493 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 USP32Q8NFA0 1604 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms