RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 TAL1P17542 331 aaPredicted RBP12.2□□□□□ -0.46
USP4-205ENST00000431357 VCAM1P19320 739 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 MAPK7Q13164 816 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 BYSLQ13895 437 aaKnown RBP12.2□□□□□ -0.46
USP4-205ENST00000431357 FAM160B2Q86V87 743 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 KSR1Q8IVT5 923 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 ACCSQ96QU6 501 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 CSRNP1Q96S65 589 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 LXNQ9BS40 222 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 TACO1Q9BSH4 297 aaKnown RBP12.2□□□□□ -0.46
USP4-205ENST00000431357 TRIM51Q9BSJ1 452 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 TDRD3Q9H7E2 651 aaKnown RBP12.2□□□□□ -0.46
USP4-205ENST00000431357 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.2□□□□□ -0.46
USP4-205ENST00000431357 CTTNBP2NLQ9P2B4 639 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 TRPC5Q9UL62 973 aaPredicted RBP12.2□□□□□ -0.46
USP4-205ENST00000431357 USP20Q9Y2K6 914 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 LOXHD1Q8IVV2 1947 aa12.2□□□□□ -0.46
USP4-205ENST00000431357 ZBTB39O15060 712 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 RTN2O75298 545 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 MTA2O94776 668 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 HNRNPH1P31943 449 aaKnown RBP12.19□□□□□ -0.46
USP4-205ENST00000431357 VAMP7P51809 220 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 MAGOHP61326 146 aaKnown RBP12.19□□□□□ -0.46
USP4-205ENST00000431357 ACTN3Q08043 901 aaPredicted RBP12.19□□□□□ -0.46
USP4-205ENST00000431357 RNF187Q5TA31 235 aaPredicted RBP12.19□□□□□ -0.46
USP4-205ENST00000431357 MEX3CQ5U5Q3 659 aaKnown RBP12.19□□□□□ -0.46
USP4-205ENST00000431357 CCDC121Q6ZUS5 278 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 JAMLQ86YT9 394 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 SPICE1Q8N0Z3 855 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 P3H4Q92791 437 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 MAGOHBQ96A72 148 aaKnown RBP12.19□□□□□ -0.46
USP4-205ENST00000431357 HOOK2Q96ED9 719 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 FAM129AQ9BZQ8 928 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 DEFB129Q9H1M3 183 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 PABPC3Q9H361 631 aaKnown RBP12.19□□□□□ -0.46
USP4-205ENST00000431357 CXorf56Q9H5V9 222 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 UBE2TQ9NPD8 197 aaPredicted RBP12.19□□□□□ -0.46
USP4-205ENST00000431357 PCYOX1Q9UHG3 505 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 CNOT7Q9UIV1 285 aaKnown RBP12.19□□□□□ -0.46
USP4-205ENST00000431357 COG5Q9UP83 839 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 ATP8A1Q9Y2Q0 1164 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 CCDC169A6NNP5 214 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 K7ENM7 598 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 IPO5O00410 1097 aaKnown RBP12.19□□□□□ -0.46
USP4-205ENST00000431357 KIAA0391O15091 583 aaKnown RBP12.19□□□□□ -0.46
USP4-205ENST00000431357 FTLP02792 175 aaPredicted RBP12.19□□□□□ -0.46
USP4-205ENST00000431357 ARP10275 920 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 GZMAP12544 262 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 PMS2P54278 862 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 IFT88Q13099 833 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 RRP1BQ14684 758 aaKnown RBP12.19□□□□□ -0.46
USP4-205ENST00000431357 TNIP1Q15025 636 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 EPC2Q52LR7 807 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 SEL1L2Q5TEA6 688 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 PADI6Q6TGC4 694 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 RAPGEF5Q92565 580 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 PGM2Q96G03 612 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 CABS1Q96KC9 395 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 IWS1Q96ST2 819 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 MXRA8Q9BRK3 442 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 WNT8AQ9H1J5 351 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 VCPKMTQ9H867 229 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 TAS2R14Q9NYV8 317 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 TMOD2Q9NZR1 351 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 WRAP73Q9P2S5 460 aaPredicted RBP12.19□□□□□ -0.46
USP4-205ENST00000431357 MTRF1LQ9UGC7 380 aaKnown RBP12.19□□□□□ -0.46
USP4-205ENST00000431357 DBR1Q9UK59 544 aaKnown RBP12.19□□□□□ -0.46
USP4-205ENST00000431357 NR2E1Q9Y466 385 aa12.19□□□□□ -0.46
USP4-205ENST00000431357 EMSYQ7Z589 1322 aa12.18□□□□□ -0.46
USP4-205ENST00000431357 P4HBP07237 508 aaKnown RBP12.18□□□□□ -0.46
USP4-205ENST00000431357 CTNNA2P26232 953 aa12.18□□□□□ -0.46
USP4-205ENST00000431357 PTGIRP43119 386 aa12.18□□□□□ -0.46
USP4-205ENST00000431357 DENND2CQ68D51 928 aa12.18□□□□□ -0.46
USP4-205ENST00000431357 STYK1Q6J9G0 422 aa12.18□□□□□ -0.46
USP4-205ENST00000431357 CCDC174Q6PII3 467 aa12.18□□□□□ -0.46
USP4-205ENST00000431357 NIPA1Q7RTP0 329 aa12.18□□□□□ -0.46
USP4-205ENST00000431357 TAX1BP1Q86VP1 789 aa12.18□□□□□ -0.46
USP4-205ENST00000431357 DAW1Q8N136 415 aa12.18□□□□□ -0.46
USP4-205ENST00000431357 SLC17A8Q8NDX2 589 aa12.18□□□□□ -0.46
USP4-205ENST00000431357 ZSWIM1Q9BR11 485 aa12.18□□□□□ -0.46
USP4-205ENST00000431357 TIPINQ9BVW5 301 aa12.18□□□□□ -0.46
USP4-205ENST00000431357 TRIM31Q9BZY9 425 aa12.18□□□□□ -0.46
USP4-205ENST00000431357 TAOK3Q9H2K8 898 aa12.18□□□□□ -0.46
USP4-205ENST00000431357 CNOT8Q9UFF9 292 aaKnown RBP12.18□□□□□ -0.46
USP4-205ENST00000431357 DDX20Q9UHI6 824 aaKnown RBP12.18□□□□□ -0.46
USP4-205ENST00000431357 AFF2P51816 1311 aa12.18□□□□□ -0.46
USP4-205ENST00000431357 RBBP6Q7Z6E9 1792 aaKnown RBP12.18□□□□□ -0.46
USP4-205ENST00000431357 GOLGA6L7A0A1B0GV03 622 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 LRRN2O75325 713 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 TMOD1P28289 359 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 ECE1P42892 770 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 SSR1P43307 286 aaKnown RBP12.17□□□□□ -0.46
USP4-205ENST00000431357 MCCD1P59942 119 aaPredicted RBP12.17□□□□□ -0.46
USP4-205ENST00000431357 C6orf118Q5T5N4 469 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 FBXW10Q5XX13 1052 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 SLC30A10Q6XR72 485 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 MIER3Q7Z3K6 550 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 RPUSD2Q8IZ73 545 aaKnown RBP12.17□□□□□ -0.46
USP4-205ENST00000431357 CACNA2D3Q8IZS8 1091 aa12.17□□□□□ -0.46
USP4-205ENST00000431357 XXYLT1Q8NBI6 393 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms