RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 GRHL1Q9NZI5 618 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 WHRNQ9P202 907 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 CTTNBP2NLQ9P2B4 639 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 AJAP1Q9UKB5 411 aaPredicted RBP11.87□□□□□ -0.51
LIMS1-207ENST00000422797 LTBP1Q14766 1721 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 BTAF1O14981 1849 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 SPATA31A6Q5VVP1 1343 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 RPTORQ8N122 1335 aa11.87□□□□□ -0.51
LIMS1-207ENST00000422797 MSH4O15457 936 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 SUN1O94901 812 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 PSMC6P62333 389 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 ELF3P78545 371 aaPredicted RBP11.86□□□□□ -0.51
LIMS1-207ENST00000422797 CTTNQ14247 550 aaKnown RBP11.86□□□□□ -0.51
LIMS1-207ENST00000422797 TMEM179Q6ZVK1 233 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 ZNF720Q7Z2F6 126 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 FAM178BQ8IXR5 827 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 ART4Q93070 314 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 TEKT1Q969V4 418 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 GRAMD1AQ96CP6 724 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 HSD17B14Q9BPX1 270 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 AZI2Q9H6S1 392 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 TMEM206Q9H813 350 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 UVRAGQ9P2Y5 699 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 ALG6Q9Y672 507 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 LOXHD1Q8IVV2 1947 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 LY75O60449 1722 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 DCDC2CA8MYV0 355 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 MEIS1O00470 390 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 CLIC2O15247 247 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 RIPK2O43353 540 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 TCEA3O75764 348 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 ATP6V1G2O95670 118 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 ECEL1O95672 775 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 ABCB4P21439 1286 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 SKIV2L2P42285 1042 aaKnown RBP11.86□□□□□ -0.51
LIMS1-207ENST00000422797 VPS72Q15906 364 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 SYDE2Q5VT97 1194 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 SP8Q8IXZ3 490 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 PRELID2Q8N945 189 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 BBOF1Q8ND07 529 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 FBXO25Q8TCJ0 367 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 GRK7Q8WTQ7 553 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 RNF25Q96BH1 459 aaPredicted RBP11.86□□□□□ -0.51
LIMS1-207ENST00000422797 FAM81BQ96LP2 452 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 SCLT1Q96NL6 688 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 IWS1Q96ST2 819 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 TIPINQ9BVW5 301 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 FOXP3Q9BZS1 431 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 TRIM31Q9BZY9 425 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 GPR88Q9GZN0 384 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 THAP2Q9H0W7 228 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 ADAM7Q9H2U9 754 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 POLD4Q9HCU8 107 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 DDX4Q9NQI0 724 aaKnown RBP11.86□□□□□ -0.51
LIMS1-207ENST00000422797 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.86□□□□□ -0.51
LIMS1-207ENST00000422797 SNX24Q9Y343 169 aa11.86□□□□□ -0.51
LIMS1-207ENST00000422797 USP15Q9Y4E8 981 aaPredicted RBP11.86□□□□□ -0.51
LIMS1-207ENST00000422797 LOC102724159A0A0B4J2E5 919 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 RSPH10B2B2RC85 870 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 C6orf229H3BNL8 230 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 NDC80O14777 642 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 OAS1P00973 400 aaKnown RBP11.85□□□□□ -0.51
LIMS1-207ENST00000422797 VIMP08670 466 aaKnown RBP11.85□□□□□ -0.51
LIMS1-207ENST00000422797 RSPH10BP0C881 870 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 ITIH2P19823 946 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 COILP38432 576 aaPredicted RBP11.85□□□□□ -0.51
LIMS1-207ENST00000422797 RPL21P46778 160 aaKnown RBP11.85□□□□□ -0.51
LIMS1-207ENST00000422797 PRELPP51888 382 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 MCCD1P59942 119 aaPredicted RBP11.85□□□□□ -0.51
LIMS1-207ENST00000422797 FKBP1AP62942 108 aaKnown RBP11.85□□□□□ -0.51
LIMS1-207ENST00000422797 GTF2IP78347 998 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 ENPEPQ07075 957 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 SLC29A2Q14542 456 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 ZNF268Q14587 947 aaPredicted RBP11.85□□□□□ -0.51
LIMS1-207ENST00000422797 PWP2Q15269 919 aaKnown RBP11.85□□□□□ -0.51
LIMS1-207ENST00000422797 PPP1R7Q15435 360 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 CNGA2Q16280 664 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 GJB7Q6PEY0 223 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 CCDC137Q6PK04 289 aaKnown RBP11.85□□□□□ -0.51
LIMS1-207ENST00000422797 CEP57Q86XR8 500 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 SLC13A5Q86YT5 568 aaPredicted RBP11.85□□□□□ -0.51
LIMS1-207ENST00000422797 LRRC34Q8IZ02 419 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 CCDC24Q8N4L8 307 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 ALG3Q92685 438 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 N4BP2L2Q92802 583 aaPredicted RBP11.85□□□□□ -0.51
LIMS1-207ENST00000422797 SLC5A5Q92911 643 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 ARHGEF26Q96DR7 871 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 LRRC19Q9H756 370 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 NOD2Q9HC29 1040 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 KCNQ5Q9NR82 932 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 SEPT11Q9NVA2 429 aaKnown RBP11.85□□□□□ -0.51
LIMS1-207ENST00000422797 POLLQ9UGP5 575 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 ACTL7BQ9Y614 415 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 TAF1LQ8IZX4 1826 aa11.85□□□□□ -0.51
LIMS1-207ENST00000422797 IGSF9BQ9UPX0 1349 aa11.84□□□□□ -0.51
LIMS1-207ENST00000422797 KLRG2A4D1S0 409 aaPredicted RBP11.84□□□□□ -0.51
LIMS1-207ENST00000422797 FAM86B1E9PN63 330 aa11.84□□□□□ -0.51
LIMS1-207ENST00000422797 SNX3O60493 162 aa11.84□□□□□ -0.51
LIMS1-207ENST00000422797 EXOC3O60645 756 aa11.84□□□□□ -0.51
LIMS1-207ENST00000422797 FTLP02792 175 aaPredicted RBP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms