RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 TRIM33Q9UPN9 1127 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 LSP1P33241 339 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 VAMP7P51809 220 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 KNOP1Q1ED39 458 aaKnown RBP12.8□□□□□ -0.36
UBR4-205ENST00000417040 LMBRD2Q68DH5 695 aaPredicted RBP12.8□□□□□ -0.36
UBR4-205ENST00000417040 EP400NLQ6ZTU2 488 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 COG4Q9H9E3 785 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 SH3GLB2Q9NR46 395 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 MIF4GDA9UHW6 222 aaKnown RBP12.8□□□□□ -0.36
UBR4-205ENST00000417040 USP17L10C9JJH3 530 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 SLC35G2Q8TBE7 412 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 TMA16Q96EY4 203 aaKnown RBP12.8□□□□□ -0.36
UBR4-205ENST00000417040 TTC25Q96NG3 672 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 ARL2BPQ9Y2Y0 163 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 RAD51CO43502 376 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 PSAPP07602 524 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 CPA2P48052 419 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 CCDC92Q53HC0 331 aaPredicted RBP12.8□□□□□ -0.36
UBR4-205ENST00000417040 LRRC31Q6UY01 552 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 DDIASQ8IXT1 998 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 NOA1Q8NC60 698 aaKnown RBP12.8□□□□□ -0.36
UBR4-205ENST00000417040 SUN2Q9UH99 717 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 SERPINB13Q9UIV8 391 aa12.8□□□□□ -0.36
UBR4-205ENST00000417040 UBE4BO95155 1302 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 KPNA7A9QM74 516 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 IGF2BP3O00425 579 aaKnown RBP eCLIP12.79□□□□□ -0.36
UBR4-205ENST00000417040 CNGA3Q16281 694 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 FAM182BQ5T319 152 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 GOLPH3Q9H4A6 298 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 TDP2O95551 362 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 ROR1Q01973 937 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 PDXDC2PQ6P474 469 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 BTNL9Q6UXG8 535 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 STOX1Q6ZVD7 989 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 MTRQ99707 1265 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 CHORDC1Q9UHD1 332 aaPredicted RBP12.79□□□□□ -0.36
UBR4-205ENST00000417040 CCDC78A2IDD5 438 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 K7ERI5 159 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 SNX2O60749 519 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 GNA15P30679 374 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 NME3Q13232 169 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 METTL23Q86XA0 190 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 PDCD6IPQ8WUM4 868 aaKnown RBP12.79□□□□□ -0.36
UBR4-205ENST00000417040 CYP26A1O43174 497 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 CARSP49589 748 aaKnown RBP12.79□□□□□ -0.36
UBR4-205ENST00000417040 FSD1LQ9BXM9 530 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 UNC45AQ9H3U1 944 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 FBXO2Q9UK22 296 aaPredicted RBP12.79□□□□□ -0.36
UBR4-205ENST00000417040 BICRAQ9NZM4 1560 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 GTPBP10A4D1E9 387 aaKnown RBP12.79□□□□□ -0.36
UBR4-205ENST00000417040 PJA2O43164 708 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 KCNA4P22459 653 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 XPAP23025 273 aaPredicted RBP12.79□□□□□ -0.36
UBR4-205ENST00000417040 CAV1Q03135 178 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 HLFQ16534 295 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 P3H1Q32P28 736 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 NBPF20Q3BBV1 942 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 SUSD4Q5VX71 490 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 KLF6Q99612 283 aaPredicted RBP12.79□□□□□ -0.36
UBR4-205ENST00000417040 KIFC3Q9BVG8 833 aa12.79□□□□□ -0.36
UBR4-205ENST00000417040 M0QYV0 167 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 CLDN3O15551 220 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 DGKIO75912 1065 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 SLC30A9Q6PML9 568 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 BBS5Q8N3I7 341 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 FAM81BQ96LP2 452 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 PNKPQ96T60 521 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 THTPAQ9BU02 230 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 CDCA7Q9BWT1 371 aaPredicted RBP12.78□□□□□ -0.36
UBR4-205ENST00000417040 ARHGAP10A1A4S6 786 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 XPO1O14980 1071 aaKnown RBP12.78□□□□□ -0.36
UBR4-205ENST00000417040 APBA3O96018 575 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 ZFXP17010 805 aaPredicted RBP12.78□□□□□ -0.36
UBR4-205ENST00000417040 RPS6P62753 249 aaKnown RBP12.78□□□□□ -0.36
UBR4-205ENST00000417040 NR1H3Q13133 447 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 RARS2Q5T160 578 aaKnown RBP12.78□□□□□ -0.36
UBR4-205ENST00000417040 CYGBQ8WWM9 190 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 CPA5Q8WXQ8 436 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 SNX19Q92543 992 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 ERP27Q96DN0 273 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 EDEM3Q9BZQ6 932 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 WNT8AQ9H1J5 351 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 MID2Q9UJV3 735 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 FAM187AA6NFU0 413 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 VCAM1P19320 739 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 NEK2P51955 445 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 RABGAP1LQ5R372 815 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 TMEM47Q9BQJ4 181 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 USP15Q9Y4E8 981 aaPredicted RBP12.78□□□□□ -0.36
UBR4-205ENST00000417040 IGSF1Q8N6C5 1336 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 LOC102724428A0A0B4J2F2 783 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 CCDC159P0C7I6 412 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 MYBL1P10243 752 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 SIK1P57059 783 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 MKRN3Q13064 507 aaKnown RBP12.78□□□□□ -0.36
UBR4-205ENST00000417040 PADI6Q6TGC4 694 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 TRPM8Q7Z2W7 1104 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 NUP93Q8N1F7 819 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 ZBTB18Q99592 522 aa12.78□□□□□ -0.36
UBR4-205ENST00000417040 DLGAP2Q9P1A6 1054 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms