RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 PLEKHO2Q8TD55 490 aa22.49■■□□□ 1.19
USP39-203ENST00000409470 SLC7A3Q8WY07 619 aa22.49■■□□□ 1.19
USP39-203ENST00000409470 NIFKQ9BYG3 293 aaKnown RBP22.49■■□□□ 1.19
USP39-203ENST00000409470 MROH8Q9H579 483 aa22.49■■□□□ 1.19
USP39-203ENST00000409470 KLRC1P26715 233 aa22.48■■□□□ 1.19
USP39-203ENST00000409470 MXI1P50539 228 aa22.48■■□□□ 1.19
USP39-203ENST00000409470 STAT5BP51692 787 aa22.48■■□□□ 1.19
USP39-203ENST00000409470 PHLDB3Q6NSJ2 640 aa22.48■■□□□ 1.19
USP39-203ENST00000409470 SLC39A4Q6P5W5 647 aa22.48■■□□□ 1.19
USP39-203ENST00000409470 ALKBH5Q6P6C2 394 aaKnown RBP22.48■■□□□ 1.19
USP39-203ENST00000409470 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.48■■□□□ 1.19
USP39-203ENST00000409470 SEPT1Q8WYJ6 367 aa22.48■■□□□ 1.19
USP39-203ENST00000409470 CCDC127Q96BQ5 260 aa22.48■■□□□ 1.19
USP39-203ENST00000409470 PCYT2Q99447 389 aa22.48■■□□□ 1.19
USP39-203ENST00000409470 PARD6BQ9BYG5 372 aa22.48■■□□□ 1.19
USP39-203ENST00000409470 DHX33Q9H6R0 707 aaKnown RBP22.48■■□□□ 1.19
USP39-203ENST00000409470 ARHGAP28Q9P2N2 729 aa22.48■■□□□ 1.19
USP39-203ENST00000409470 NAGPAQ9UK23 515 aa22.48■■□□□ 1.19
USP39-203ENST00000409470 SNX12Q9UMY4 172 aa22.48■■□□□ 1.19
USP39-203ENST00000409470 CCDC172P0C7W6 258 aa22.48■■□□□ 1.19
USP39-203ENST00000409470 SCN4AP35499 1836 aa22.48■■□□□ 1.19
USP39-203ENST00000409470 TCF7P36402 384 aaPredicted RBP22.48■■□□□ 1.19
USP39-203ENST00000409470 BRDTQ58F21 947 aaPredicted RBP22.48■■□□□ 1.19
USP39-203ENST00000409470 FGD4Q96M96 766 aa22.48■■□□□ 1.19
USP39-203ENST00000409470 ERVK-9P63128 1117 aa22.47■■□□□ 1.19
USP39-203ENST00000409470 EPC2Q52LR7 807 aa22.47■■□□□ 1.19
USP39-203ENST00000409470 KCNV1Q6PIU1 500 aa22.47■■□□□ 1.19
USP39-203ENST00000409470 TMEM117Q9H0C3 514 aa22.47■■□□□ 1.19
USP39-203ENST00000409470 PORCNQ9H237 461 aa22.47■■□□□ 1.19
USP39-203ENST00000409470 UBE2TQ9NPD8 197 aaPredicted RBP22.47■■□□□ 1.19
USP39-203ENST00000409470 PNMA3Q9UL41 463 aa22.47■■□□□ 1.19
USP39-203ENST00000409470 MYH10P35580 1976 aa22.47■■□□□ 1.19
USP39-203ENST00000409470 DNAJC25-GNG10A0A024R161 153 aa22.47■■□□□ 1.19
USP39-203ENST00000409470 ZNF185O15231 689 aa22.47■■□□□ 1.19
USP39-203ENST00000409470 STRN3Q13033 797 aa22.47■■□□□ 1.19
USP39-203ENST00000409470 BMS1Q14692 1282 aaKnown RBP22.47■■□□□ 1.19
USP39-203ENST00000409470 TMCO3Q6UWJ1 677 aa22.47■■□□□ 1.19
USP39-203ENST00000409470 MMS19Q96T76 1030 aa22.47■■□□□ 1.19
USP39-203ENST00000409470 GPR88Q9GZN0 384 aa22.47■■□□□ 1.19
USP39-203ENST00000409470 AZI2Q9H6S1 392 aa22.47■■□□□ 1.19
USP39-203ENST00000409470 DDX41Q9UJV9 622 aaKnown RBP22.47■■□□□ 1.19
USP39-203ENST00000409470 LRRC37A2A6NM11 1700 aa22.46■■□□□ 1.19
USP39-203ENST00000409470 SOCS7O14512 581 aa22.46■■□□□ 1.19
USP39-203ENST00000409470 ARIH2O95376 493 aa22.46■■□□□ 1.19
USP39-203ENST00000409470 CYP2C8P10632 490 aa22.46■■□□□ 1.19
USP39-203ENST00000409470 GARTP22102 1010 aa22.46■■□□□ 1.19
USP39-203ENST00000409470 RFC5P40937 340 aa22.46■■□□□ 1.19
USP39-203ENST00000409470 LIG4P49917 911 aa22.46■■□□□ 1.19
USP39-203ENST00000409470 TAS1R3Q7RTX0 852 aa22.46■■□□□ 1.19
USP39-203ENST00000409470 USP37Q86T82 979 aa22.46■■□□□ 1.19
USP39-203ENST00000409470 DEPTORQ8TB45 409 aa22.46■■□□□ 1.19
USP39-203ENST00000409470 ASAP3Q8TDY4 903 aa22.46■■□□□ 1.19
USP39-203ENST00000409470 AFAP1L1Q8TED9 768 aa22.46■■□□□ 1.19
USP39-203ENST00000409470 LRRIQ4A6NIV6 560 aa22.45■■□□□ 1.18
USP39-203ENST00000409470 NOP56O00567 594 aaKnown RBP22.45■■□□□ 1.18
USP39-203ENST00000409470 LRRN2O75325 713 aa22.45■■□□□ 1.18
USP39-203ENST00000409470 GLRA2P23416 452 aa22.45■■□□□ 1.18
USP39-203ENST00000409470 MAP2K1Q02750 393 aaPredicted RBP22.45■■□□□ 1.18
USP39-203ENST00000409470 GPD1LQ8N335 351 aa22.45■■□□□ 1.18
USP39-203ENST00000409470 PARD3BQ8TEW8 1205 aa22.45■■□□□ 1.18
USP39-203ENST00000409470 U2AF1L4Q8WU68 220 aaKnown RBP22.45■■□□□ 1.18
USP39-203ENST00000409470 HYOU1Q9Y4L1 999 aa22.45■■□□□ 1.18
USP39-203ENST00000409470 DDX3XO00571 662 aaKnown RBP eCLIP22.45■■□□□ 1.189e-13■■■■□ 21.9
USP39-203ENST00000409470 PALMO75781 387 aa22.45■■□□□ 1.18
USP39-203ENST00000409470 RHOXF2BP0C7M4 288 aa22.45■■□□□ 1.18
USP39-203ENST00000409470 PRLRP16471 622 aa22.45■■□□□ 1.18
USP39-203ENST00000409470 ARL2P36404 184 aa22.45■■□□□ 1.18
USP39-203ENST00000409470 NAMPTP43490 491 aa22.45■■□□□ 1.18
USP39-203ENST00000409470 MAP1SQ66K74 1059 aaPredicted RBP22.45■■□□□ 1.18
USP39-203ENST00000409470 ARHGEF19Q8IW93 802 aa22.45■■□□□ 1.18
USP39-203ENST00000409470 NOA1Q8NC60 698 aaKnown RBP22.45■■□□□ 1.18
USP39-203ENST00000409470 GLG1Q92896 1179 aa22.45■■□□□ 1.18
USP39-203ENST00000409470 FBXL18Q96ME1 805 aa22.45■■□□□ 1.18
USP39-203ENST00000409470 RHOXF2Q9BQY4 288 aa22.45■■□□□ 1.18
USP39-203ENST00000409470 ANKZF1Q9H8Y5 726 aa22.45■■□□□ 1.18
USP39-203ENST00000409470 ZNF446Q9NWS9 450 aa22.45■■□□□ 1.18
USP39-203ENST00000409470 LRRIQ3A6PVS8 624 aaPredicted RBP22.44■■□□□ 1.18
USP39-203ENST00000409470 BTNL10A8MVZ5 291 aa22.44■■□□□ 1.18
USP39-203ENST00000409470 PMM2O15305 246 aa22.44■■□□□ 1.18
USP39-203ENST00000409470 NCK2O43639 380 aa22.44■■□□□ 1.18
USP39-203ENST00000409470 TCP1P17987 556 aaKnown RBP22.44■■□□□ 1.18
USP39-203ENST00000409470 KRT39Q6A163 491 aa22.44■■□□□ 1.18
USP39-203ENST00000409470 FBXO16Q8IX29 292 aaPredicted RBP22.44■■□□□ 1.18
USP39-203ENST00000409470 TMC2Q8TDI7 906 aa22.44■■□□□ 1.18
USP39-203ENST00000409470 VTI1AQ96AJ9 217 aa22.44■■□□□ 1.18
USP39-203ENST00000409470 RPGRIP1Q96KN7 1286 aa22.44■■□□□ 1.18
USP39-203ENST00000409470 MFSD14AQ96MC6 490 aa22.44■■□□□ 1.18
USP39-203ENST00000409470 CEP89Q96ST8 783 aa22.44■■□□□ 1.18
USP39-203ENST00000409470 POP1Q99575 1024 aaKnown RBP22.44■■□□□ 1.18
USP39-203ENST00000409470 FAM213AQ9BRX8 229 aa22.44■■□□□ 1.18
USP39-203ENST00000409470 FOXN3O00409 490 aaPredicted RBP22.43■■□□□ 1.18
USP39-203ENST00000409470 H2AFZP0C0S5 128 aa22.43■■□□□ 1.18
USP39-203ENST00000409470 POTEJP0CG39 1038 aa22.43■■□□□ 1.18
USP39-203ENST00000409470 MCCD1P59942 119 aaPredicted RBP22.43■■□□□ 1.18
USP39-203ENST00000409470 CYP24A1Q07973 514 aa22.43■■□□□ 1.18
USP39-203ENST00000409470 TARBP2Q15633 366 aaKnown RBP22.43■■□□□ 1.18
USP39-203ENST00000409470 CELF3Q5SZQ8 465 aaKnown RBP22.43■■□□□ 1.18
USP39-203ENST00000409470 NFRKBQ6P4R8 1299 aa22.43■■□□□ 1.18
USP39-203ENST00000409470 H2AFVQ71UI9 128 aa22.43■■□□□ 1.18
USP39-203ENST00000409470 DNAAF5Q86Y56 855 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms