RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.17□□□□□ -1.422e-27■■■■■ 27.1
CLK1-202ENST00000409403 RGPD2P0DJD1 1756 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 LAMA2P24043 3122 aaKnown RBP6.17□□□□□ -1.42
CLK1-202ENST00000409403 RPGRIP1LQ68CZ1 1315 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 TTC41PQ6P2S7 1318 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 COL11A2P13942 1736 aaPredicted RBP6.17□□□□□ -1.42
CLK1-202ENST00000409403 A0A087WUV0 522 aaPredicted RBP6.17□□□□□ -1.42
CLK1-202ENST00000409403 A0A1W2PQ45 241 aaPredicted RBP6.17□□□□□ -1.42
CLK1-202ENST00000409403 A0A1W2PQY0 241 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 TMCO5BA8MYB1 307 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 FAM47E-STBD1D6RA91 191 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 GOLGA6L19H0YKK7 550 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 WNT9AO14904 365 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 POLR3GO15318 223 aaPredicted RBP6.17□□□□□ -1.42
CLK1-202ENST00000409403 SRGAP2CP0DJJ0 459 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 CPEP16870 476 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 GRK2P25098 689 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 GRK3P35626 688 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 BCL6P41182 706 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 KIR2DL1P43626 348 aaPredicted RBP6.17□□□□□ -1.42
CLK1-202ENST00000409403 KIR2DL2P43627 348 aaPredicted RBP6.17□□□□□ -1.42
CLK1-202ENST00000409403 LMAN1P49257 510 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 EXOSC9Q06265 439 aaKnown RBP6.17□□□□□ -1.42
CLK1-202ENST00000409403 FAM47CQ5HY64 1035 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 RALGPS1Q5JS13 557 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 LCE3BQ5TA77 95 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 WWC2Q6AWC2 1192 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 TTLL5Q6EMB2 1281 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 ZNF574Q6ZN55 896 aaPredicted RBP6.17□□□□□ -1.42
CLK1-202ENST00000409403 SLCO6A1Q86UG4 719 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 MORC1Q86VD1 984 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 DDX42Q86XP3 938 aaKnown RBP eCLIP6.17□□□□□ -1.42
CLK1-202ENST00000409403 DTX1Q86Y01 620 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 WFDC3Q8IUB2 231 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 LRRC8AQ8IWT6 810 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 CCAR2Q8N163 923 aaKnown RBP6.17□□□□□ -1.42
CLK1-202ENST00000409403 Q8N3U1 123 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 PLCD4Q9BRC7 762 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 CELF4Q9BZC1 486 aaKnown RBP6.17□□□□□ -1.42
CLK1-202ENST00000409403 ARFGAP3Q9NP61 516 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 TOMM22Q9NS69 142 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 ORC3Q9UBD5 711 aaPredicted RBP6.17□□□□□ -1.42
CLK1-202ENST00000409403 EBF1Q9UH73 591 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 FBXL7Q9UJT9 491 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 TMEM59LQ9UK28 342 aa6.17□□□□□ -1.42
CLK1-202ENST00000409403 NFAT5O94916 1531 aa6.16□□□□□ -1.42
CLK1-202ENST00000409403 TTC28Q96AY4 2481 aa6.16□□□□□ -1.42
CLK1-202ENST00000409403 ACEP12821 1306 aa6.16□□□□□ -1.42
CLK1-202ENST00000409403 EIF3CLB5ME19 914 aaKnown RBP6.16□□□□□ -1.42
CLK1-202ENST00000409403 SKILP12757 684 aa6.16□□□□□ -1.42
CLK1-202ENST00000409403 MAP3K12Q12852 859 aa6.16□□□□□ -1.42
CLK1-202ENST00000409403 DHCR24Q15392 516 aa6.16□□□□□ -1.42
CLK1-202ENST00000409403 TICAM2Q86XR7 235 aa6.16□□□□□ -1.42
CLK1-202ENST00000409403 FMNL3Q8IVF7 1028 aa6.16□□□□□ -1.42
CLK1-202ENST00000409403 ANKS4BQ8N8V4 417 aa6.16□□□□□ -1.42
CLK1-202ENST00000409403 IGSF22Q8N9C0 903 aa6.16□□□□□ -1.42
CLK1-202ENST00000409403 PRPF38AQ8NAV1 312 aaKnown RBP6.16□□□□□ -1.42
CLK1-202ENST00000409403 DPF3Q92784 378 aa6.16□□□□□ -1.42
CLK1-202ENST00000409403 JMJD8Q96S16 334 aa6.16□□□□□ -1.42
CLK1-202ENST00000409403 EIF3CQ99613 913 aaKnown RBP6.16□□□□□ -1.42
CLK1-202ENST00000409403 ORAI3Q9BRQ5 295 aa6.16□□□□□ -1.42
CLK1-202ENST00000409403 API5Q9BZZ5 524 aaKnown RBP6.16□□□□□ -1.42
CLK1-202ENST00000409403 ZSCAN16Q9H4T2 348 aaPredicted RBP6.16□□□□□ -1.42
CLK1-202ENST00000409403 IPPKQ9H8X2 491 aa6.16□□□□□ -1.42
CLK1-202ENST00000409403 A1CFQ9NQ94 594 aaKnown RBP6.16□□□□□ -1.42
CLK1-202ENST00000409403 CLDND1Q9NY35 253 aa6.16□□□□□ -1.42
CLK1-202ENST00000409403 DNAI1Q9UI46 699 aa6.16□□□□□ -1.42
CLK1-202ENST00000409403 COQ6Q9Y2Z9 468 aa6.16□□□□□ -1.42
CLK1-202ENST00000409403 BCORQ6W2J9 1755 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 H7BY64 318 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 GSTA4O15217 222 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 STX6O43752 255 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 RAB11FIP3O75154 756 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 USP2O75604 605 aaPredicted RBP6.15□□□□□ -1.42
CLK1-202ENST00000409403 GLRX3O76003 335 aaKnown RBP6.15□□□□□ -1.42
CLK1-202ENST00000409403 SMC2O95347 1197 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 MED26O95402 600 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 CKMP06732 381 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 TUBBP07437 444 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 SPINK2P20155 84 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 EPHX2P34913 555 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 CD97P48960 835 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 CDKN1CP49918 316 aaPredicted RBP6.15□□□□□ -1.42
CLK1-202ENST00000409403 RTP1P59025 263 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 IRX1P78414 480 aaPredicted RBP6.15□□□□□ -1.42
CLK1-202ENST00000409403 CHRNEQ04844 493 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 LRMPQ12912 555 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 STRN3Q13033 797 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 BRD3Q15059 726 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 ZKSCAN8Q15776 578 aaPredicted RBP6.15□□□□□ -1.42
CLK1-202ENST00000409403 SEPT7Q16181 437 aaKnown RBP6.15□□□□□ -1.42
CLK1-202ENST00000409403 RGL3Q3MIN7 710 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 CCDC93Q567U6 631 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 CEP128Q6ZU80 1094 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 STRA8Q7Z7C7 330 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 TADA2BQ86TJ2 420 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.15□□□□□ -1.42
CLK1-202ENST00000409403 FLCNQ8NFG4 579 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 CACTINQ8WUQ7 758 aaKnown RBP6.15□□□□□ -1.42
CLK1-202ENST00000409403 FBXW5Q969U6 566 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms