RNA–Protein interactions for RNA: ENST00000399903.6

PTPRA-205, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 5 BASIC

Gene PTPRA, Length 3,337 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-205ENST00000399903 IRF2BP2Q7Z5L9 587 aa18.36■□□□□ 0.53
PTPRA-205ENST00000399903 SYCE1Q8N0S2 351 aa18.36■□□□□ 0.53
PTPRA-205ENST00000399903 RAD54LQ92698 747 aa18.36■□□□□ 0.53
PTPRA-205ENST00000399903 PGM2Q96G03 612 aa18.36■□□□□ 0.53
PTPRA-205ENST00000399903 PVALEFA0A1B0GWK0 134 aa18.35■□□□□ 0.53
PTPRA-205ENST00000399903 PRPHP41219 470 aa18.35■□□□□ 0.53
PTPRA-205ENST00000399903 APOBEC3HQ6NTF7 200 aaKnown RBP18.35■□□□□ 0.53
PTPRA-205ENST00000399903 EIF1ADQ8N9N8 165 aaKnown RBP18.35■□□□□ 0.53
PTPRA-205ENST00000399903 TTC8Q8TAM2 541 aa18.35■□□□□ 0.53
PTPRA-205ENST00000399903 CTNNBL1Q8WYA6 563 aaPredicted RBP18.35■□□□□ 0.53
PTPRA-205ENST00000399903 KCNMB3Q9NPA1 279 aa18.35■□□□□ 0.53
PTPRA-205ENST00000399903 METTL5Q9NRN9 209 aaKnown RBP18.35■□□□□ 0.53
PTPRA-205ENST00000399903 AIPL1Q9NZN9 384 aa18.35■□□□□ 0.53
PTPRA-205ENST00000399903 PCDHB13Q9Y5F0 798 aa18.35■□□□□ 0.53
PTPRA-205ENST00000399903 UBR3Q6ZT12 1888 aa18.35■□□□□ 0.53
PTPRA-205ENST00000399903 SLF2Q8IX21 1173 aa18.35■□□□□ 0.53
PTPRA-205ENST00000399903 SRRM1Q8IYB3 904 aaKnown RBP18.35■□□□□ 0.53
PTPRA-205ENST00000399903 SYN2Q92777 582 aaPredicted RBP18.35■□□□□ 0.53
PTPRA-205ENST00000399903 STMN4Q9H169 189 aaPredicted RBP18.35■□□□□ 0.53
PTPRA-205ENST00000399903 ZNF831Q5JPB2 1677 aa18.35■□□□□ 0.53
PTPRA-205ENST00000399903 M0R2N6 131 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 CLIC2O15247 247 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 ENTPD5O75356 428 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 BRAFP15056 766 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 NPR1P16066 1061 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 FERP16591 822 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 AOC3Q16853 763 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 REXO1Q8N1G1 1221 aaKnown RBP18.34■□□□□ 0.53
PTPRA-205ENST00000399903 RBM46Q8TBY0 533 aaKnown RBP18.34■□□□□ 0.53
PTPRA-205ENST00000399903 SPIRE2Q8WWL2 714 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 INTUQ9ULD6 942 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 ROBO3Q96MS0 1386 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 DDTLA6NHG4 134 aaPredicted RBP18.34■□□□□ 0.53
PTPRA-205ENST00000399903 USP17L10C9JJH3 530 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 AHCYL1O43865 530 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 CWF19L1Q69YN2 538 aaKnown RBP18.34■□□□□ 0.53
PTPRA-205ENST00000399903 RPUSD2Q8IZ73 545 aaKnown RBP18.34■□□□□ 0.53
PTPRA-205ENST00000399903 GBP7Q8N8V2 638 aaPredicted RBP18.34■□□□□ 0.53
PTPRA-205ENST00000399903 POP1Q99575 1024 aaKnown RBP18.34■□□□□ 0.53
PTPRA-205ENST00000399903 RPTORQ8N122 1335 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 CRKP46108 304 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 KLRC3Q07444 240 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 SETDB1Q15047 1291 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 ARHGAP44Q17R89 818 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 DUPD1Q68J44 220 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 TRIM59Q8IWR1 403 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 TEKT1Q969V4 418 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 RAB3IPQ96QF0 476 aaPredicted RBP18.34■□□□□ 0.53
PTPRA-205ENST00000399903 GANQ9H2C0 597 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 ARHGEF3Q9NR81 526 aa18.34■□□□□ 0.53
PTPRA-205ENST00000399903 SUCLA2Q9P2R7 463 aaPredicted RBP18.34■□□□□ 0.53
PTPRA-205ENST00000399903 AJAP1Q9UKB5 411 aaPredicted RBP18.34■□□□□ 0.53
PTPRA-205ENST00000399903 SHMT1P34896 483 aa18.33■□□□□ 0.53
PTPRA-205ENST00000399903 TSNAXIP1Q2TAA8 658 aa18.33■□□□□ 0.53
PTPRA-205ENST00000399903 SUPT20HQ8NEM7 779 aa18.33■□□□□ 0.53
PTPRA-205ENST00000399903 UCMAQ8WVF2 138 aa18.33■□□□□ 0.53
PTPRA-205ENST00000399903 PITPNM3Q9BZ71 974 aa18.33■□□□□ 0.53
PTPRA-205ENST00000399903 EMILIN3Q9NT22 766 aa18.33■□□□□ 0.53
PTPRA-205ENST00000399903 ZDHHC18Q9NUE0 388 aa18.33■□□□□ 0.53
PTPRA-205ENST00000399903 KIAA1024Q9UPX6 916 aa18.33■□□□□ 0.53
PTPRA-205ENST00000399903 A6NHS1 94 aa18.33■□□□□ 0.52
PTPRA-205ENST00000399903 DDX3XO00571 662 aaKnown RBP eCLIP18.33■□□□□ 0.526e-26■■■■■ 54.6
PTPRA-205ENST00000399903 FESP07332 822 aa18.33■□□□□ 0.52
PTPRA-205ENST00000399903 ALADP13716 330 aa18.33■□□□□ 0.52
PTPRA-205ENST00000399903 PTENP60484 403 aa18.33■□□□□ 0.52
PTPRA-205ENST00000399903 USP4Q13107 963 aa18.33■□□□□ 0.52
PTPRA-205ENST00000399903 ECM1Q16610 540 aa18.33■□□□□ 0.52
PTPRA-205ENST00000399903 GPBP1Q86WP2 473 aa18.33■□□□□ 0.52
PTPRA-205ENST00000399903 RAB34Q9BZG1 259 aa18.33■□□□□ 0.52
PTPRA-205ENST00000399903 RXFP1Q9HBX9 757 aa18.33■□□□□ 0.52
PTPRA-205ENST00000399903 KIAA0391O15091 583 aaKnown RBP18.33■□□□□ 0.52
PTPRA-205ENST00000399903 EPHB2P29323 1055 aa18.33■□□□□ 0.52
PTPRA-205ENST00000399903 KLC1Q07866 573 aa18.33■□□□□ 0.52
PTPRA-205ENST00000399903 DCAF12L1Q5VU92 463 aa18.33■□□□□ 0.52
PTPRA-205ENST00000399903 RFX8Q6ZV50 586 aa18.33■□□□□ 0.52
PTPRA-205ENST00000399903 GCNT4Q9P109 453 aa18.33■□□□□ 0.52
PTPRA-205ENST00000399903 A0A1W2PRG0 241 aa18.32■□□□□ 0.52
PTPRA-205ENST00000399903 NUDT17P0C025 328 aa18.32■□□□□ 0.52
PTPRA-205ENST00000399903 MARCKSL1P49006 195 aa18.32■□□□□ 0.52
PTPRA-205ENST00000399903 ZDHHC24Q6UX98 284 aa18.32■□□□□ 0.52
PTPRA-205ENST00000399903 ZC3H18Q86VM9 953 aaKnown RBP18.32■□□□□ 0.52
PTPRA-205ENST00000399903 B4GALNT2Q8NHY0 566 aa18.32■□□□□ 0.52
PTPRA-205ENST00000399903 PIGOQ8TEQ8 1089 aa18.32■□□□□ 0.52
PTPRA-205ENST00000399903 SH3GLB2Q9NR46 395 aa18.32■□□□□ 0.52
PTPRA-205ENST00000399903 NKIRAS1Q9NYS0 192 aa18.32■□□□□ 0.52
PTPRA-205ENST00000399903 ANKRD63C9JTQ0 380 aa18.32■□□□□ 0.52
PTPRA-205ENST00000399903 RIPK2O43353 540 aa18.32■□□□□ 0.52
PTPRA-205ENST00000399903 PPP1R11O60927 126 aaPredicted RBP18.32■□□□□ 0.52
PTPRA-205ENST00000399903 XRCC5P13010 732 aaKnown RBP18.32■□□□□ 0.52
PTPRA-205ENST00000399903 GNA11P29992 359 aa18.32■□□□□ 0.52
PTPRA-205ENST00000399903 MAPK7Q13164 816 aa18.32■□□□□ 0.52
PTPRA-205ENST00000399903 ADGRF4Q8IZF3 695 aa18.32■□□□□ 0.52
PTPRA-205ENST00000399903 DTX3LQ8TDB6 740 aa18.32■□□□□ 0.52
PTPRA-205ENST00000399903 FAM163AQ96GL9 167 aaPredicted RBP18.32■□□□□ 0.52
PTPRA-205ENST00000399903 TDRD3Q9H7E2 651 aaKnown RBP18.32■□□□□ 0.52
PTPRA-205ENST00000399903 DNAJC18Q9H819 358 aa18.32■□□□□ 0.52
PTPRA-205ENST00000399903 CTTNBP2NLQ9P2B4 639 aa18.32■□□□□ 0.52
PTPRA-205ENST00000399903 STK17AQ9UEE5 414 aa18.32■□□□□ 0.52
PTPRA-205ENST00000399903 IGSF9BQ9UPX0 1349 aa18.32■□□□□ 0.52
PTPRA-205ENST00000399903 LAMB1P07942 1786 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms